Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1180 ATGGAGCAAACTACGGGAGGATTGCGCGGATCCGTTCACGACGGTATCACATTCGAGTCCATTCAATTCAACGAAGAAATCCAAGGAATCATGGCGCCGGCGCCGGCGCCGGAAAACGCCAGCTCATTCACCGCGCTGCTTGAGCTCCCGCCGACGCAGGCCGTCGAGCTCCTTCACGCGCCGGATTCCGACGCTCGGAAACCGCCTAGTTGCCACGTCGGCATGAATCAGAAACCCTATCTGCTCAACTCTTTCAGTGGCAATTTGACTTTCCCTTCCAACGCCGCCTTAATCGAACGCGCCGCCAAATTCTCCGTGTTCGCCGGCGATAACTCTCCGCCGCCGGGGGAGGCGCTCTTGGTCCCCGCCGGGTCCGGTTCGAATTTGGATAAGGTGAAGAACGAGCCGCAAGAGACTGATTCGAACCCCTGCTCGACTCAGGGGTGCGTTTCGGATCCCGCGGTTGAGAACAAGAATCAGAGGACCGCGAAGAGAAAAGAGAGAGAGAAGAAGGTGAAAGGGTCGTCGAAGAAGAGTAAGAGCGTCGCCGATGAGTCCTCCGGTGACGGCGAGAAGCTTCCTTACGTCCATGTTCGAGTTCGTCGAGGTCAAGCCACAGACAGCCATAGCTTGGCAGAAAGGGCTAGGAGAGAGAAGATCAATGCTCGCATGAAGCTTTTGCAAGAGCTGGTCCCAGGCTGCGACAAGATATCAGGAACGGCATTGGTTCTGGATGAAATAATCAATCATGTGCAATCTCTACAGCGTCAAGTGGAGATCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAGCCTTGACAGCTTATTGGCCACTGATGGGGCATCTCTAATGGACAGTAACTTACCTAGCATGGTTACACCTCCCATGTGGCCAGAAATCCCACTCAATGGTAACCGACAGCATTATCAACAACAGTGGCAATTCGACACATTTCACCAACCACTATGGGCGAGAGAAGACGACAACCATAATTTCATGACTCCAGAAAACTCACTTTTAAGTTATGACTCGTCGGCAAACTCAGCATCTCTGCACTCAAATCAATTGAAGATGGAACTGTGA 1095 0.5224 MEQTTGGLRGSVHDGITFESIQFNEEIQGIMAPAPAPENASSFTALLELPPTQAVELLHAPDSDARKPPSCHVGMNQKPYLLNSFSGNLTFPSNAALIERAAKFSVFAGDNSPPPGEALLVPAGSGSNLDKVKNEPQETDSNPCSTQGCVSDPAVENKNQRTAKRKEREKKVKGSSKKSKSVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCDKISGTALVLDEIINHVQSLQRQVEILSMKLAAVNPRIDFSLDSLLATDGASLMDSNLPSMVTPPMWPEIPLNGNRQHYQQQWQFDTFHQPLWAREDDNHNFMTPENSLLSYDSSANSASLHSNQLKMEL* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1180 364 Coils Coil 244 264 - -
Apr4g1180 364 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 204 254 IPR011598 GO:0046983
Apr4g1180 364 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 364 - -
Apr4g1180 364 MobiDBLite consensus disorder prediction 174 194 - -
Apr4g1180 364 CDD bHLH_AtBPE_like 194 279 - -
Apr4g1180 364 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 202 273 IPR036638 GO:0046983
Apr4g1180 364 Gene3D - 201 273 IPR036638 GO:0046983
Apr4g1180 364 MobiDBLite consensus disorder prediction 138 157 - -
Apr4g1180 364 Pfam Helix-loop-helix DNA-binding domain 208 255 IPR011598 GO:0046983
Apr4g1180 364 SMART finulus 210 260 IPR011598 GO:0046983
Apr4g1180 364 MobiDBLite consensus disorder prediction 115 194 - -
Apr4g1180 364 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 16 364 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1180 Apr-Chr4 10243247 10249558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1180 5 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 53.247 8.43e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1180 HLH 1.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1180 - - gmx:100814124 623.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1180 4 10243247 10249558 Apr4g1180 4 10243247 10249558 ECH
Apr4g1180 4 10243247 10249558 Apr8g0787 8 7991987 7997468 PCT