Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1179 ATGGATTCAAATTCCGGTTATCAACAACCCAGTTCTGGGTTACTTCGCTTTCGCTCTGCCCCTGCTCCAGTACTCGCGAATTTCAAACAAGGGGAAGGTGTTGCTCCCAATAATGGAACCTCATGGGAAGGTTCTGAACCGGGTTTGAGATTTTTCAATTCCGGTGACGGCAACAATACAGCGTCGCTTAGCTTACGAGAATTCGTGGATAATAATAAGCCTTCTAATGATAATAAAGCACACAACGAGTCATCTATATCATCACCTTTGAGTCGCATGAATTCTCAGCAGTGTTATACATACAGTACTTCTTCTGTTTTACCTCTGAGGCATAACTCTAGTGTTAGTTCGTCGATGATGATGGGTTCTATGGGAACGGAGCAAGTCAAAACCTTCAATTCTCATCTTCTCAGGCAGAGTAGTTTTCCTGCCGGTCATTTTTTTAACAACATCGCCTTTCAGAATGGATATGATACTATGAAAGGTGTTGGAAGCTATGGTGGGGTGAATGAGAGTGATGATGAACTTAGTCTATCAATGAACAGAATGAAGAATCAAATTAGCTTCTCTTCAATGTTATCACAGACATCCAAAATGGGGAATGAGGGAATTGGAGCAACTAACACTGATGAAGGGAGACCGGGGTGTAGCAATGGTGATGCTCGATATTATGGCACAGGATTCCCTTATACTTCTTGGAATGAGACATCACACCTCTCAGATAAATTCGTTGGCTCGAAAAGACAGCGAAATAGTAATGATGAGTTACTTTCTGATGTACAGAATGGAGAGCTAGGAAATCAAGTGCATACGCTATCGCATCACTTGAGTTTGCCAAGCGCATCATCAGAGATCTTTTCTATGGAAAAAATGCTTCAGTTCCCAGATTCTGTTCCTTGTAAAATCAGAGCAAAGAGAGGCTTTGCTACTCATCCTCGAAGCATTGCCGAAAGGGTGAGAAGAACTAGAATCAGTGAACGAATAAGAAAATTGCAAGAGCTTGTTCCAAACATGGAGAAGCAAACCAGCACAGCAGACATGTTGGACTTGGCTGTAGAGTACATAAAAGATCTTCAGAAACAATTCAAGACTCTGGGTGAAAAACGAGCAAAATGCAAATGTGTAAACATGAAAAAGTCAGAAACAGATCAAATTACTTGA 1161 0.4126 MDSNSGYQQPSSGLLRFRSAPAPVLANFKQGEGVAPNNGTSWEGSEPGLRFFNSGDGNNTASLSLREFVDNNKPSNDNKAHNESSISSPLSRMNSQQCYTYSTSSVLPLRHNSSVSSSMMMGSMGTEQVKTFNSHLLRQSSFPAGHFFNNIAFQNGYDTMKGVGSYGGVNESDDELSLSMNRMKNQISFSSMLSQTSKMGNEGIGATNTDEGRPGCSNGDARYYGTGFPYTSWNETSHLSDKFVGSKRQRNSNDELLSDVQNGELGNQVHTLSHHLSLPSASSEIFSMEKMLQFPDSVPCKIRAKRGFATHPRSIAERVRRTRISERIRKLQELVPNMEKQTSTADMLDLAVEYIKDLQKQFKTLGEKRAKCKCVNMKKSETDQIT* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1179 386 CDD bHLH_AtbHLH_like 313 365 IPR045239 -
Apr4g1179 386 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 308 358 IPR011598 GO:0046983
Apr4g1179 386 Pfam Helix-loop-helix DNA-binding domain 314 359 IPR011598 GO:0046983
Apr4g1179 386 Gene3D - 310 382 IPR036638 GO:0046983
Apr4g1179 386 PANTHER TRANSCRIPTION FACTOR BHLH130 7 378 - -
Apr4g1179 386 Coils Coil 321 341 - -
Apr4g1179 386 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 378 - -
Apr4g1179 386 SMART finulus 314 364 IPR011598 GO:0046983
Apr4g1179 386 MobiDBLite consensus disorder prediction 29 56 - -
Apr4g1179 386 MobiDBLite consensus disorder prediction 69 91 - -
Apr4g1179 386 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 310 373 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1179 Apr-Chr4 10210833 10214980 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1179 1 364 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 41.818 2.72e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1179 HLH 1.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1179 - - gmx:100814652 489.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1179 4 10210833 10214980 Apr4g1179 4 10210833 10214980 ECH
Apr4g1179 4 10210833 10214980 Apr2g2352 2 28331348 28334497 ECH
Apr4g1179 4 10210833 10214980 Apr8g0783 8 7920221 7924048 PCT