Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1170 ATGATGCAATCTTCTTCTTCATCTTCTTATATCCCCGGAAACTACCTAAGCAAGGATTCGGGAGCTTATGATTTGGGTGAATTGGATCAAGCACTTTTTCTCTATCTTGATGGACAAACAGACCCTTCGAGTGTTCAAGACCAAAGACAGAACTCTTTATCAGGGATGAGGCCTCCAACTCTCAACATTTTCCCGTCTAAGCCTATGCACGTAGAGCCATCATCATCCAATTCTAAGCGAGAGGCCAATCGCAAGGGTCCAACATCTAGTTCTGAACAAGAAGGTCCTAAAACACCAGATCCTAAGACACTCAGAAGACTTGCTCAGAATAGAGAGGCAGCTAGGAAAAGTAGGCTTAGGAAAAAGGCATATGTTCAACAGCTAGAGTCGAGTAGGATTAGGCTTAATCAGCTGGAACAAGAGCTACAGCGTGCTAGAGCTCAAGGCATATTCTCCGGTGGAGGTGCACTTTTGGGAGGAGAGCAAGGCCTCCCTGTCGCTATGAATAGCATTAGCACAGAGGCTGCAATGTTTGACGTAGAGTATGCTAGATGGCTAGAGGAGCACCATCGCCTAGTGTGTGAGCTAAGAGCTGCAGTGCAAGAGCACCTTCCCGAGAATGAGCTTAGACTGTTTGTGGACAATTGTTTGGCGCATTATGACCAAGTAATGAACCTCAAGAGCTTAGTGGCCAAAACAGACGTGTTCCATCTTGTTTCTGGCATGTGGAAGACCCCAGCTGAACGTTGCTTCATGTGGATCGGTGGATTCAGGCCATCTGAACTCATTAAGATTATTCCGAGTCAAATTGAACCTCTCACAGAGCAACAAATATTGGGTATATGTGGGTTGCAACAATCTACGCAAGAGGCAGAAGAGGCTCTCTCTCAAGGGCTTGAGTCTCTCAATCAATCTCTCTCAGACACTATAACATCAGACTCATTGAGCTATCCTCCCAATATGGCTAACTATATGGGCCAGATGGCAGTGGCCATGAACAAGCTCTCCACTCTTGAAGGTTTCGTGAGACAGGCAGATAGTTTGCGGCACCAAACCATTCATCGTCTGCATCAGATTCTAACGATACGTCAAGCAGCAAGGTGTTTTCTGGCCATAGCTGAGTACTTCCATCGTCTGCGAGCCCTGAGTTCGTTGTGGTTGGCACGCCCTCGCTCAGAATAG 1182 0.4679 MMQSSSSSSYIPGNYLSKDSGAYDLGELDQALFLYLDGQTDPSSVQDQRQNSLSGMRPPTLNIFPSKPMHVEPSSSNSKREANRKGPTSSSEQEGPKTPDPKTLRRLAQNREAARKSRLRKKAYVQQLESSRIRLNQLEQELQRARAQGIFSGGGALLGGEQGLPVAMNSISTEAAMFDVEYARWLEEHHRLVCELRAAVQEHLPENELRLFVDNCLAHYDQVMNLKSLVAKTDVFHLVSGMWKTPAERCFMWIGGFRPSELIKIIPSQIEPLTEQQILGICGLQQSTQEAEEALSQGLESLNQSLSDTITSDSLSYPPNMANYMGQMAVAMNKLSTLEGFVRQADSLRHQTIHRLHQILTIRQAARCFLAIAEYFHRLRALSSLWLARPRSE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1170 393 ProSiteProfiles DOG1 domain profile. 175 389 IPR025422 GO:0006351|GO:0043565
Apr4g1170 393 SUPERFAMILY Leucine zipper domain 102 144 IPR046347 GO:0003700|GO:0006355
Apr4g1170 393 Coils Coil 121 148 - -
Apr4g1170 393 Gene3D - 101 150 - -
Apr4g1170 393 MobiDBLite consensus disorder prediction 1 15 - -
Apr4g1170 393 MobiDBLite consensus disorder prediction 39 59 - -
Apr4g1170 393 SMART brlzneu 98 171 IPR004827 GO:0003700|GO:0006355
Apr4g1170 393 CDD bZIP_HBP1b-like 102 154 - -
Apr4g1170 393 MobiDBLite consensus disorder prediction 39 105 - -
Apr4g1170 393 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 105 120 IPR004827 GO:0003700|GO:0006355
Apr4g1170 393 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 100 144 IPR004827 GO:0003700|GO:0006355
Apr4g1170 393 PANTHER TRANSCRIPTION FACTOR TGA9 78 392 - -
Apr4g1170 393 PANTHER TRANSCRIPTION FACTOR TGA9 41 76 - -
Apr4g1170 393 MobiDBLite consensus disorder prediction 1 21 - -
Apr4g1170 393 Pfam bZIP transcription factor 102 136 IPR004827 GO:0003700|GO:0006355
Apr4g1170 393 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 41 76 - -
Apr4g1170 393 PANTHER BZIP TRANSCRIPTION FACTOR TGA10 78 392 - -
Apr4g1170 393 Pfam Seed dormancy control 193 266 IPR025422 GO:0006351|GO:0043565
Apr4g1170 393 MobiDBLite consensus disorder prediction 69 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1170 Apr-Chr4 10063715 10069809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1170 13 393 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT5G06839 61.538 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Apr4g1170 DOG1 8.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1170 K14431 - gmx:100815176 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1170 4 10063715 10069809 Apr4g1170 4 10063715 10069809 ECH
Apr4g1170 4 10063715 10069809 Apr8g0777 8 7854337 7861707 PCT