Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1165 ATGTATAAATGCACAAGTGGGAATGCTGATTCTATTTGTGATGATTTCCCACCAGGCATTCCACCTCCTGATACCAATACCACTTTTTATCTTTGTCTTGATCGAAAAGGGTGCTGTAATTTCACCATAGTACAAGCAGCTGTGAATGCAATTCCTGATTTTAGCTTAAAAAGAACCATAATATGGATAAATAGTGGCATCTACTATGAGAAAGTTATGGTTCCCAAAACCAAACCCAACATTACATTTCAAGGACAAGGTTATACTTCAACTGCAATTGCATGGAATGATACTGCATTGTCCGCAAATGGCACATTTTCTAGTGGCTCTGTACAAGTTTTCGCCTCCAACTTCATTGCTAAGAATATAAGCTTCATGAATTTAGCACCAATTCCAAGTCCTGGGGCTGTTGGTGCACAAGCAGTAGCCATTAGAATTTCGGGAGATCAAAGCGAATTTAGGGGTTGTGGATTCTTTGGAGCCCAAGACACCCTTCATGATGATAAGGGTCGCCATTACTTCAAAGACTGCTATATCCAAGGCTCCATTGACTTCATATTCGGCAATGCAAGGTCACTCTATGAGAATTGTCAACTAGTTTCCATAGCGAATCCCGTACCAGCGGGACAAAAGAGCATAAATGGCGCTGTTACAGCTCATGGTAGAGCTTCAACGGATGAAAACACAGGATTCACATTTGTGAACAGTACAATAGGAGGAAACGGGAGAATATGGTTGGGTCGAGCATGGAGACCTTATTCCCGTGTTGTTTTTGCCTTCACAATTATGTCAGATATCATTGCCCCTGAAGGTTGGAATGATTTCAACGACCCTTCAAGAGATCAGACTGTTTTCTATGGAGAATACAAATGCTCGGGGCCTGGGGCTGATACAAGCATGAGGGCATCTTATGTACAAAGATTAAATGATACACAAGCTTTGGCATTCCTCAACATAACTTTTATCGATGGCGACCAATGGTTGGAAACTTCCAAACTAAGCTAA 1005 0.4149 MYKCTSGNADSICDDFPPGIPPPDTNTTFYLCLDRKGCCNFTIVQAAVNAIPDFSLKRTIIWINSGIYYEKVMVPKTKPNITFQGQGYTSTAIAWNDTALSANGTFSSGSVQVFASNFIAKNISFMNLAPIPSPGAVGAQAVAIRISGDQSEFRGCGFFGAQDTLHDDKGRHYFKDCYIQGSIDFIFGNARSLYENCQLVSIANPVPAGQKSINGAVTAHGRASTDENTGFTFVNSTIGGNGRIWLGRAWRPYSRVVFAFTIMSDIIAPEGWNDFNDPSRDQTVFYGEYKCSGPGADTSMRASYVQRLNDTQALAFLNITFIDGDQWLETSKLS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1165 334 Pfam Pectinesterase 36 325 IPR000070 GO:0030599|GO:0042545
Apr4g1165 334 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 7 331 - -
Apr4g1165 334 SUPERFAMILY Pectin lyase-like 31 329 IPR011050 -
Apr4g1165 334 ProSitePatterns Pectinesterase signature 2. 179 188 IPR033131 -
Apr4g1165 334 Gene3D - 26 334 IPR012334 -
Apr4g1165 334 PANTHER PECTINESTERASE 8-RELATED 7 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1165 Apr-Chr4 9965418 9969093 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1165 11 333 Carbohydrate Esterase AT1G05310 72.755 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1165 - - aprc:113862143 694.886