Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1161 ATGGTTTGCGACTTCCTCCATCTGCCTAGTCTCTACCTCCTTGTTTTCTCGTCCATTTTGATTTCTCAGGGCTTGGCGTTCACTTATCCATCTGAAGTGTCAGCTCTCCAGGATCTATACAGGGCCTTAAACTACCCACCGGTGCTCCAAGGATGGAATGGTAGCGATCCTTGTGAGGAATCTTGGACAGGAGTTGCTTGTTCTGGCTCATCAGTTATACACCTGAAAATTCGAGGATTGAACCTTACTGGCTATCTTGGAAGCCTGCTTTATGATCTCCGTAACTTGAAACGACTTGATGTTAGTTCTAATAACATAGTGGGCGAAATACCATTCGGTTTACCCGCCAATGTCACACATATGAATTTAAGCCACAATTTCTTAAATGGGCCCATTGGTGATGTCTTTACTGGCTTAGATAATCTCAAAGAAATGGACCTTTCATACAATAATTTCTTAGGTGATCTGCCGTGTTCATTTGGTTCCTTAAGAAACCTTGCTAGATTGTTCCTGCAAAATAACAGATTCACTGGAGCGGTCGCTTACCTGGCTGAACTTCCACTAACAGATTTGAACATTCAAGATAATCTGTTCAGTGGCATTCTTCCACTGCATTTTCAATCCATACTGAATTTATGGATTGGAGGGAATAAATTCCGTGCAGAGGACAACTCGCCTTCGTGGACTTTTCCTCTGGACACTGTATCAGTTAAGCATAACGCTAGCAGCCCACCCACAACTCAGGCAAATGCCATTAAGAATTATGCTCCTCCCAGATTAAATGACGCGCCTCCCAGAACGAAACATATAGGTCGTGGAGGAATAGCAATTATGGTTGGAGGAGGAACACTAATGGCCACAGGTATGGTGCTCTTGGTTGCAATCCGTTTGAATAAACTGCAAGCAGAGAGTCAGAGCTTGAAGAGCTCCGAAAGCAACCATGGCTCTTTGCTTTCTCATCCGACCAGTGCAACCATAGAGGTCTCTTCTACCGCACTAGATGAGAGCCCACAAATCCCCCCTTTTAACTCTGCATCTCATTCGGAATTGGATCCAATGCTATTGCCTCCCCTGAGCCAGAACAATACAGAGGAACTATCAAGAAGAAGTTTTTCTAAACGAGGCAGATCCACTGGAAGAACGAAGATTTACACAGTAGCGGAGCTTCAGGTGGCTACTAACTGCTTCAGTGAAGGCAACCTTCTGGGAGAGGGATCTATTGGTCCTGTTTACAGAGCTAAATTTCCAGATGGCAAAATTTTGGCCGTGAACAACATAAACATGGCGGGCCAGTATTTCAGAGAAGAGGAAAACTTCTTGGATGTCATTTGCACAGTTTCCCGACTGAAGCACCCCAACATCGTAGCACTCCACGGTTACTGTTTGGAGCGCGGAAAGCAGCTTCTTGTTTACGATTACGTTGGTAATTTAACTCTAGACGATGTTCTTCATAGTGAGCCATACAAACCTCTGTCGTGGATTCAACGTCTTCGGATTGCTCTGGAAATTGCTCAGGCTCTGGACTATTTGCACTCAGCATTCAGCCCTCCTGTGACCCACGGCAACTTGAAGGCTACCAATGTCCTGCTGGATGAAAATTTGACGCCTCGCGTATGTGATTGTAGCTTGGCTATTTTGAGACCACTCAATCAAGTTAAAATTCCGGCTACTGAGATTATTATTGAAGAGAGAGGCTACGTTGCACCAGACCATGGACAACCAGGATCCAGTAGCAGAAAGAGAGACGTTTTTGCCTTTGGGGTATTGCTTCTGGAGCTCTTAACAGGAAGAAAACCTTTCGATGGAGCAAGGCCAAGGGAAGAGCAATATCTAGCGAAATGGGCTTCACCCAGGCTTCGTGATAGAGTGAGTTTGGAGCAGATGGTCGATCCCGGTATGAAAAGAACATTTTCGTTCAAGGCTCTTTCTCATTATGCTGATATCACCTCACTCTGTATACAGGCAGAAAGGCAACTCCGTCCTCCAATGTCTGAAGTTGTGGCGTCTCTTGTATCTTTGTACCAAAAGTTCAACATTGAAAAGAGTGGTGTTGTAGATGGTACTGAATTCGATCCGCTTGAGAGATCTTTCCGTTCAACCAACACACGCTTTATGGTTTCACCAACAATAAGCCATGCATCAGCATGA 2148 0.4493 MVCDFLHLPSLYLLVFSSILISQGLAFTYPSEVSALQDLYRALNYPPVLQGWNGSDPCEESWTGVACSGSSVIHLKIRGLNLTGYLGSLLYDLRNLKRLDVSSNNIVGEIPFGLPANVTHMNLSHNFLNGPIGDVFTGLDNLKEMDLSYNNFLGDLPCSFGSLRNLARLFLQNNRFTGAVAYLAELPLTDLNIQDNLFSGILPLHFQSILNLWIGGNKFRAEDNSPSWTFPLDTVSVKHNASSPPTTQANAIKNYAPPRLNDAPPRTKHIGRGGIAIMVGGGTLMATGMVLLVAIRLNKLQAESQSLKSSESNHGSLLSHPTSATIEVSSTALDESPQIPPFNSASHSELDPMLLPPLSQNNTEELSRRSFSKRGRSTGRTKIYTVAELQVATNCFSEGNLLGEGSIGPVYRAKFPDGKILAVNNINMAGQYFREEENFLDVICTVSRLKHPNIVALHGYCLERGKQLLVYDYVGNLTLDDVLHSEPYKPLSWIQRLRIALEIAQALDYLHSAFSPPVTHGNLKATNVLLDENLTPRVCDCSLAILRPLNQVKIPATEIIIEERGYVAPDHGQPGSSSRKRDVFAFGVLLLELLTGRKPFDGARPREEQYLAKWASPRLRDRVSLEQMVDPGMKRTFSFKALSHYADITSLCIQAERQLRPPMSEVVASLVSLYQKFNIEKSGVVDGTEFDPLERSFRSTNTRFMVSPTISHASA* 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1161 715 Gene3D Phosphorylase Kinase; domain 1 359 473 - -
Apr4g1161 715 MobiDBLite consensus disorder prediction 239 254 - -
Apr4g1161 715 Pfam Leucine rich repeat N-terminal domain 31 68 IPR013210 -
Apr4g1161 715 MobiDBLite consensus disorder prediction 328 345 - -
Apr4g1161 715 SUPERFAMILY Protein kinase-like (PK-like) 375 670 IPR011009 -
Apr4g1161 715 MobiDBLite consensus disorder prediction 328 374 - -
Apr4g1161 715 Gene3D Ribonuclease Inhibitor 28 257 IPR032675 -
Apr4g1161 715 MobiDBLite consensus disorder prediction 239 267 - -
Apr4g1161 715 PANTHER STRUBBELIG-RECEPTOR FAMILY PROTEIN 2 715 - -
Apr4g1161 715 Pfam Leucine rich repeat 117 176 IPR001611 GO:0005515
Apr4g1161 715 Pfam Protein tyrosine and serine/threonine kinase 399 670 IPR001245 GO:0004672|GO:0006468
Apr4g1161 715 PANTHER OS01G0253100 PROTEIN 2 715 IPR045271 GO:0004714|GO:0006468
Apr4g1161 715 SUPERFAMILY L domain-like 28 221 - -
Apr4g1161 715 Gene3D Transferase(Phosphotransferase) domain 1 475 689 - -
Apr4g1161 715 ProSiteProfiles Protein kinase domain profile. 396 677 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1161 Apr-Chr4 9925082 9930599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1161 11 715 Strubbelig Receptor Gene Family AT5G06820 51.635 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Apr4g1161 PK_Tyr_Ser-Thr 1.8e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1161 - - gmx:100775254 1054.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1161 4 9925082 9930599 Apr4g1161 4 9925082 9930599 ECH
Apr4g1161 4 9925082 9930599 Apr8g0774 8 7812735 7817941 PCT