Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1160 ATGGGTTCTGACTCTGCCACCAAAACCCCCTCCTCGCCGCCTAACTCTTCTTCTGAGTCTCTCAATGGCCTGAAATTTGGTCAAAAAATCTATTTTGAGGATGTGGGTCTGGCCACTCCTGCCACCTCTGTTGCTGCTTCATCATCATCTTCTTCTTCTTCTTCAAAGAAGGGAAGAGGTGGGTCTCTTCAACCGGCTCAGCCTCCTAGGTGCCAAGTTGAGGGTTGTAAAGTAGATCTGAGTGATGCCAAAGCTTACTATTCTAGGCACAAAGTTTGTGGCATGCATTCCAAATCCCCCACTGTCATTGTTGCTGGCCTCCAACAAAGGTTTTGTCAACAGTGTAGCAGATTTCATCAGCTTCCTGAGTTTGATCAAGGGAAAAGAAGTTGCCGCAGGCGACTAGCTGGCCATAATGAACGTCGGAGAAAGCCCCCACCCAGCTCTCTCTTAACCTCTCGTTATGGCAGAATCTCTTCATCTGTTTTTGATAACAGTGGCAGAGGTGGCAACTTTCTGATGGAATTGTCGTCGTACCCAAAACTTAGTCTGAGAAATTCACTTCCAACACCTAGATCATCCGAGCTAGTTCCTGGAAATCAAACCACAACACTTAACTGGCAGGGGAACTCAGAGACACCACCTGACCTTTTCTTGCACGGTTCAGTGGGTGGAACAAGCTTCCCCGGTCCTGGACATCCTCCAGGGGAAAGTTACACCGGAGTCACAGACTCAAGCTGTGCTCTCTCTCTTCTGTCAAATCAAACATGGGTTTCTCGAAACGCAGCACCAAGTCTTGGGTTGAGTAACATGATAAATTTCAATGGGACACCCATGACACAACTTGCCGCAGCGTCTCATGGTGCAGCCATCCATCAACTTCCAAATACCTCATGGTGTTTCAAGGGCATTGATCCCGATAACTGTTCACATGAGGTTGTCCCTGATCTAGGCCTCGGTCAAATTTCACAGCCTCTCAACAGCCAACTTCCTGGGGAGCTCGATCTGGCACAAGGCAGGAGGCATTATATGGATCTAGAGCAGTCCAGAGCCTATGAATCTCCTCATTGGTCACTTTAA 1080 0.4824 MGSDSATKTPSSPPNSSSESLNGLKFGQKIYFEDVGLATPATSVAASSSSSSSSSKKGRGGSLQPAQPPRCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPTVIVAGLQQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKPPPSSLLTSRYGRISSSVFDNSGRGGNFLMELSSYPKLSLRNSLPTPRSSELVPGNQTTTLNWQGNSETPPDLFLHGSVGGTSFPGPGHPPGESYTGVTDSSCALSLLSNQTWVSRNAAPSLGLSNMINFNGTPMTQLAAASHGAAIHQLPNTSWCFKGIDPDNCSHEVVPDLGLGQISQPLNSQLPGELDLAQGRRHYMDLEQSRAYESPHWSL* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1160 359 Pfam SBP domain 71 144 IPR004333 GO:0003677
Apr4g1160 359 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677|GO:0005634
Apr4g1160 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 1 358 IPR044817 GO:0003677
Apr4g1160 359 MobiDBLite consensus disorder prediction 134 153 - -
Apr4g1160 359 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g1160 359 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677
Apr4g1160 359 MobiDBLite consensus disorder prediction 42 71 - -
Apr4g1160 359 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 17 1 358 - -
Apr4g1160 359 MobiDBLite consensus disorder prediction 42 61 - -
Apr4g1160 359 Gene3D - 61 132 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1160 Apr-Chr4 9918860 9923359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1160 24 359 SBP-box Gene Family AT2G42200 44.932 1.28e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Apr4g1160 SBP 9.7e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1160 - - gmx:100807165 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1160 4 9918860 9923359 Apr4g1160 4 9918860 9923359 ECH
Apr4g1160 4 9918860 9923359 Apr8g0771 8 7775393 7779614 PCT