Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1157 ATGGAGGATTTGAAGAAGAGGAAGCTGGAAGAAGGGAACGATGATTTTGCTTCGAAGGAAGAGATTCGATTCCTGATTGAACCTTTAGCTAAACCCCAGCTCGTTGAACTTCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACATCTTCAGAAACTTTGCGTGCTGCATTTCAAGAGCATGGAGAAATTGAGGAAGGTGCCGTGATCTATGATAAAGCAACAGGAAAATCCCGTGGCTATGGATTTATCACCTACAAAAATATGGAATCAACTCAGCAAGCACTGAGAGCCCCTAGCAAGTTAATTGATGGAAGATTGGCTGTCTGTAATCTAGCTTGTGAAGGTCTAAGTGGAACAAGTAGTGCTCCTGATCTTGCCCTGAGGAAGCTTTATATTGGAAGTTTATCACCAGAAGTCACAAGTGAAATGCTGCTTAACTATTTTGCGAGGCATGGTGAAATAGAGGAAGGTTCAGTTGCATATGATAAGGATACAAATGAATCACGTGGATTTGGCTTTGTTACGTACAAGACAGCAGAAGCTGCAAAGAAGGCCATAGATGATCCTGAAAAGATTCTTGGGGGAAGGAATATAATTGTAAAATATGCCGATTCCCACAAAGGTAAAACTGGCCAGCCGCCATTTCCTGCTGGAGTGGTTCCAATGGCTGCCTTACCTATGAACCCAGGATATATGCAGGCTGGAAAAGCTCATGTTAGTTCAGGGCCCCCAGTCAATTACACTTACCCACAAACTGTTGCACCATATTCTGCATCTCCTTATCCAAACCCTCCCACTGCCCCCTCACCTTATCCAACACAAGGGCAGGTTCCTTATCCTCCAGTTTCTGCAAAGAAGGACCAACTTGGGTATCCACCCACTCAACCTGTTGGAATGAATAACTACCCATATTATTATCCCAAGCAATGA 1008 0.4365 MEDLKKRKLEEGNDDFASKEEIRFLIEPLAKPQLVELLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLRAAFQEHGEIEEGAVIYDKATGKSRGYGFITYKNMESTQQALRAPSKLIDGRLAVCNLACEGLSGTSSAPDLALRKLYIGSLSPEVTSEMLLNYFARHGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKILGGRNIIVKYADSHKGKTGQPPFPAGVVPMAALPMNPGYMQAGKAHVSSGPPVNYTYPQTVAPYSASPYPNPPTAPSPYPTQGQVPYPPVSAKKDQLGYPPTQPVGMNNYPYYYPKQ* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1157 335 MobiDBLite consensus disorder prediction 286 322 - -
Apr4g1157 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 65 131 IPR000504 GO:0003723
Apr4g1157 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 224 IPR000504 GO:0003723
Apr4g1157 335 Gene3D - 54 140 IPR012677 -
Apr4g1157 335 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 13 335 - -
Apr4g1157 335 SMART rrm1_1 64 136 IPR000504 GO:0003723
Apr4g1157 335 SMART rrm1_1 155 227 IPR000504 GO:0003723
Apr4g1157 335 CDD RRM_RBM24_RBM38_like 63 138 - -
Apr4g1157 335 Gene3D - 141 239 IPR012677 -
Apr4g1157 335 PANTHER UBP1-ASSOCIATED PROTEIN 2C-LIKE 13 335 - -
Apr4g1157 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 63 131 IPR000504 GO:0003723
Apr4g1157 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
Apr4g1157 335 SUPERFAMILY RNA-binding domain, RBD 57 140 IPR035979 GO:0003676
Apr4g1157 335 MobiDBLite consensus disorder prediction 286 303 - -
Apr4g1157 335 SUPERFAMILY RNA-binding domain, RBD 151 242 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1157 Apr-Chr4 9895796 9899934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1157 146 265 C2H2 Transcription Factor Family AT2G19380 33.858 1.07e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1157 K12741 - gmx:100776344 592.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1157 4 9895796 9899934 Apr4g1157 4 9895796 9899934 ECH