LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr4g1156	ATGTATCATGAATGTAGTCCCCGAATGTACGGGACTCAATGGGAATACTACAGGGGGATTAGCAACTTATCCAAGGTTGTTGGATCAGAACAGAGTTTTGAGCCCTCAAAATCATCCTCCAACATTGTAACAATTCCTTTTCAAACTCCACCAGGTTTTTGTCCAAGTACAGCCAAAGGCCTTGAGAGCTTTCAAGATCAAGAACATAAACATGATCAGCATCAGATTGAAGTTCCTTCTTGGTGCTTTGAGTTTCCAAAGACAGCAACAGATCTCGGAGATAACTTCACCAATACTACCACTAAACAAGATCAACCCACTTCTCAATTCACTAGCTCCTTGTACCCGGTTGCTGAATCTTACCTGTCTAGCAGTGCAGATTGTAATTCTTGTTCTGAAAATTATAGTAAATTTTCTTCTTGTTCTAAAAAACACAGTGATTTTCAGCCAGACAATATGCCATATTACGATCATATTTCACAAGAACATGATAAATTGCTGAGGGATGATGCTGCCACAGATGAGAGGCCCTTCGAAATTTCCTTTCAGAGAAACCAGTTACCATCATGTACAAAACTAGAAAAGCAGGTTCTTCATCGACCTTGTGGGGTTGCATGTGGCAATTCCAGCAACTCTGCTTCTAGGAGAGGTAAAAGAAGAATAAGATGGACCAAAGATTTGCATGAGCCATTTATGATGATTGTTAATAGTCTTGGTGGTCCCGAAAAAGCAAAGCCTAAGGCTATACTAGAGATGATGAAATCAGATTTGCTGTCCATTTCTCATGTTAAAAGTCATTTGCAGAAATGTAGGTCAACAATACAGATACCCAAAGCTTTGCTGGAAAGATCTGAGGAAGGACAAAGAACAAATGAGGTCAATGAGCTTCAAGTGAAAATCCACATGCAAATTGAGGAATCACGGCAACTCCAATTAGAAATCCGGAAGAGTATTGGCCAACAACTAGAGATGCAACGAAATTTGCAAATGCTAATTGAACAGCAAAGCAAGCAGCTCAAAGTAATGTTAGAGTACCAAAAGGAAAGAACCAAACTCTTGACACAGAATTGGAAGTGA	1077	0.3965	MYHECSPRMYGTQWEYYRGISNLSKVVGSEQSFEPSKSSSNIVTIPFQTPPGFCPSTAKGLESFQDQEHKHDQHQIEVPSWCFEFPKTATDLGDNFTNTTTKQDQPTSQFTSSLYPVAESYLSSSADCNSCSENYSKFSSCSKKHSDFQPDNMPYYDHISQEHDKLLRDDAATDERPFEISFQRNQLPSCTKLEKQVLHRPCGVACGNSSNSASRRGKRRIRWTKDLHEPFMMIVNSLGGPEKAKPKAILEMMKSDLLSISHVKSHLQKCRSTIQIPKALLERSEEGQRTNEVNELQVKIHMQIEESRQLQLEIRKSIGQQLEMQRNLQMLIEQQSKQLKVMLEYQKERTKLLTQNWK*	359

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Apr4g1156	358	TIGRFAM	myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class	218	272	IPR006447	GO:0003677
Apr4g1156	358	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE	19	353	IPR044848	GO:0003700
Apr4g1156	358	Gene3D	-	217	274	-	-
Apr4g1156	358	PANTHER	MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN	19	353	-	-
Apr4g1156	358	Coils	Coil	293	313	-	-
Apr4g1156	358	SUPERFAMILY	Homeodomain-like	217	274	IPR009057	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr4g1156	Apr-Chr4	9891809	9893993	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr4g1156	200	346	G2-like Transcription Factor Family	AT4G28610	44.966	7.17e-32	122

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Apr4g1156		None	None	None

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr4g1156	-		-	gmx:102662952	480.715

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