Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1155 ATGAATGAAAACAAGATTGATTGGGGGGGACTGATTCAACAAAGTCATGGACTAAATGGGGATTTCATTTCTGAGTTTGGTAATCATTATTGTCAATATTTTGATATGAGACAGCCTTGGAATATGGGACCACTTGCTATGGCTGGAGGAGGAGGAGGAGGAGGATCAGAACAGTTACCAAACATAGCTTCTGCCAAATCATCTGGCACTATTATGAGCCGTTTTGAGTCACCAACTTCTGCCTTTTATGCTGCAGAAAATTGCATGGGATTTGCAGAATATAATTGCCAAGTTGGTATTAATTCTTTGAGCTCTCAGTTATATAAGATTAATGATTTGGAATTCCCCTTGTATCAATCTCCCAGGGAAAGCCTTTTCGTGGATCCAGCAAACCAACCTGACTCAAACTTTGAGTTGTCAAACACTTTACAAGCCATAGTGAAATCTCAATTGAATAATAGTCAATGCTGTAGATCACCAGAAAAGTCCAACAAAATTTCATGTGGGAATTTTCCTACCATGTTCCTTCCAATTGATCACCAAAAGTTGTTCATTGACGATGTTACCTCAGTTAAAGGGAGTTCATCATTTCATAACAAAGGAAATCAGGACCGTAAAGTTGCTTGTGCATCATATAATTTACCAGTTTCACAGCTGAGTTTCTCTTCCCACAATGAGAAATTGTCTCCAACACTTTCCGCAGGAAGTGTGTCATCTACTTTTGGAAACTCTGCTTCAAATGGGACAGTAGTCTCAAGTAAAACACGTATAAGATGGACTAAGGATCTTCATGAGAAGTTTGTTGAGTGTGTCAATCGCCTTGGGGGTGCTGACCAGGCAACACCAAAAGCTATATTAAAGATGATGGAGACAGATGGTTTGACTATCTTCCATGTCAAAAGTCATTTGCAGAAATATAGAATTGCAAAATTCATTCCGGAGGCAGGTCAAGGGAAACCTGACAAAAGAATCCATGCAAAGGATGTCCATCATCTTGATGTCAAAACTGGCTTGCAAATTAGAGAGGCACTTAAGCTTCAATTAGATACTCAAAGGTGTCTTCATGAACAACTTGAGATTCAGAGAAAATTACAGTTGCGAATAGAGGAACAAGGCAGGCAGCTGAAAAAAATGTTTGACCAACAGCAGAAGACAAGTAATGACCTCTTGAATACTCAGACTATGGCCAATGATGATACAACAAAGAGACATAAAGATGTTGATGTTTCTATTTCTGAAGGGGCTTGA 1248 0.391 MNENKIDWGGLIQQSHGLNGDFISEFGNHYCQYFDMRQPWNMGPLAMAGGGGGGGSEQLPNIASAKSSGTIMSRFESPTSAFYAAENCMGFAEYNCQVGINSLSSQLYKINDLEFPLYQSPRESLFVDPANQPDSNFELSNTLQAIVKSQLNNSQCCRSPEKSNKISCGNFPTMFLPIDHQKLFIDDVTSVKGSSSFHNKGNQDRKVACASYNLPVSQLSFSSHNEKLSPTLSAGSVSSTFGNSASNGTVVSSKTRIRWTKDLHEKFVECVNRLGGADQATPKAILKMMETDGLTIFHVKSHLQKYRIAKFIPEAGQGKPDKRIHAKDVHHLDVKTGLQIREALKLQLDTQRCLHEQLEIQRKLQLRIEEQGRQLKKMFDQQQKTSNDLLNTQTMANDDTTKRHKDVDVSISEGA* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1155 415 Pfam MYB-CC type transfactor, LHEQLE motif 338 385 IPR025756 -
Apr4g1155 415 Coils Coil 341 361 - -
Apr4g1155 415 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 254 309 IPR006447 GO:0003677
Apr4g1155 415 MobiDBLite consensus disorder prediction 380 397 - -
Apr4g1155 415 MobiDBLite consensus disorder prediction 398 415 - -
Apr4g1155 415 Pfam Myb-like DNA-binding domain 258 307 IPR001005 -
Apr4g1155 415 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 253 311 IPR017930 -
Apr4g1155 415 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 43 414 IPR044848 GO:0003700
Apr4g1155 415 MobiDBLite consensus disorder prediction 380 415 - -
Apr4g1155 415 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 43 414 - -
Apr4g1155 415 Gene3D - 253 312 - -
Apr4g1155 415 SUPERFAMILY Homeodomain-like 252 308 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1155 Apr-Chr4 9882631 9885393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1155 237 382 G2-like Transcription Factor Family AT4G28610 56.081 2.62e-48 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Apr4g1155 Myb_DNA-binding 2.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1155 - - ccaj:109797364 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1155 4 9882631 9885393 Apr4g1155 4 9882631 9885393 ECH