Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1150 ATGGATATCCGCAAGAGGGGAAGACCCGAACACAGCTTCAATATTAATGGCGGACTTAAGAAATCTAAGCAAGAAATGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGTACCAAGTTTTTCAGCACTGCTGGTTGCCCATTTGGCGAGGGCTGCCACTTCTTACACTTTGTTCCTGGTGGTTATAATGCGGTTGCCCAGATGATGAATCTAACACCTGCAGCCCCTCCAGCATCAAGAAATGTCATGGGACCGCCTGCAGCTGGTCGAATTGGGGGTCGAATGGAGCCTCCTCCTGGTCCTGCTTCAAGTTTTGGTGCCAATGCCACTGCCAAGATTAGTGTAGAAGCTTCCTTGGCTGGAGCAATCATTGGGAAAGGTGGTGTGAACTCAAAACAGATCTGCCGGCAAACTGGAGCCAAACTTTCGATCCGAGAGCATGAATCTGACCCAAATCTAAGAAATATTGAACTTGAGGGGAGTTTTGAACAAATTAAGGAAGCAAGTAACATGGTAAAGGATTTACTGTTGACCCTGCAAATGTCTGCACTGCCTAAAACAACTGCCGGGGTTCCTGGGGCACCTGCCCCCCATGGAAGCAACTATAAGACGAAACTGTGTGAAAATTTTGCAAAAGGATCTTGTACTTTTGGAGAACGATGTCACTTTGCACATGGAGCTGCTGAATTGCGTAAATGA 708 0.4689 MDIRKRGRPEHSFNINGGLKKSKQEMESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHFVPGGYNAVAQMMNLTPAAPPASRNVMGPPAAGRIGGRMEPPPGPASSFGANATAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHESDPNLRNIELEGSFEQIKEASNMVKDLLLTLQMSALPKTTAGVPGAPAPHGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRK* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1150 235 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 9 81 - -
Apr4g1150 235 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 92 235 - -
Apr4g1150 235 ProSiteProfiles Type-1 KH domain profile. 111 175 - -
Apr4g1150 235 SMART kh_6 110 180 IPR004087 GO:0003676
Apr4g1150 235 SUPERFAMILY CCCH zinc finger 35 59 IPR036855 GO:0046872
Apr4g1150 235 CDD KH-I 113 176 - -
Apr4g1150 235 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 205 229 IPR000571 GO:0046872
Apr4g1150 235 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 92 235 - -
Apr4g1150 235 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 9 81 - -
Apr4g1150 235 MobiDBLite consensus disorder prediction 17 32 - -
Apr4g1150 235 Pfam KH domain 114 176 IPR004088 GO:0003723
Apr4g1150 235 Gene3D K Homology domain, type 1 107 203 IPR036612 GO:0003723
Apr4g1150 235 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Apr4g1150 235 Gene3D - 204 235 - -
Apr4g1150 235 ProSiteProfiles Zinc finger C3H1-type profile. 204 231 IPR000571 GO:0046872
Apr4g1150 235 SMART c3hfinal6 204 230 IPR000571 GO:0046872
Apr4g1150 235 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Apr4g1150 235 MobiDBLite consensus disorder prediction 1 32 - -
Apr4g1150 235 SUPERFAMILY CCCH zinc finger 203 234 IPR036855 GO:0046872
Apr4g1150 235 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 183 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1150 Apr-Chr4 9804806 9807836 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Apr4g1150 KH_1 2.4e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1150 - - thj:104799299 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1150 4 9804806 9807836 Apr4g1150 4 9804806 9807836 ECH
Apr4g1150 4 9804806 9807836 Apr8g0760 8 7583999 7589895 PCT