Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1135 ATGGAGGAAGAGGGCTCAGATGCAATGAACCTTGATTTGAATCTGGGTCCAGGCCCAGAGCTACCAAGCGGGTCCATTAGCAATGAAGCTATGAACTTGGACGATTGGATAGGTGAGAGAATCAGTGAAGCTGTGAGGCTTAGGGCGAGACAAAGGTGGCGATGGCGGCATCTCCCTATACCTCATCCTGAAGTTCATGTTCACATTCCACCTGAAGCCACACGGCATTTGCATATCCCACCAGAAGCACACAACATTTCCATGGAATTGAACCAGTTTTTGGTCAATTCAGGTAATGGAAGTGCCTTGCAGGCCGGAGAAGGCAGCGTGGCCGCAGAGGAGAGGATGGAGGAGGCGCCAAAAGCGTGTGAGAACATCAATGGTGTTGCGGAGGATGAGGCATCACAGAAGAAGGATGATGTGGAAAAGGGTAGTGGCAATGATGGGGACTTTTTTGATTGTAATATCTGTTTGGACCTGGCTATGGACCCTGTTGTGACGTGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTGTATCGATGGCTGCATCTGCATTCGGATGCTAAGGAATGTCCTGTTTGCAAGGGGGAGGTGACTCTCAAGAGTGTTACCCCAATCTATGGCCGTGCAAACAATGCCCGTGGTCCTGATGATGATTCTGCTCTTAAAATCCCTCCTAGGCCGCAAGCACGGCGGGTTGAGAGCCTTAGACAAACCATTCAAAGAAATGCATTTGTTGCACTCCCTGTGGAAGAGATGATTCGGCGCCTTGGAAGCAGAATTGATCTTACTCGCGATTTAGTTCAGCCTCACGAGCCAGACACTGCTCGGGAGACAGCAGATAGAACTACCACTTTCCTAAGTAGGTTCTTGACAACTCGAGGTTTGAGGAGAGAGCAGAATGTTGGGGCACCCCCTGATGATGTTGTGGGTATGACACAGAACAATGTTAGTACTTCTGAGGCTGGGACTGGGGATAACCGCAGGGTGCAATCCCCTTTGCTTAGAAGAACACAATCACACAGAGCAACACTTTCTACTCTTTCATCGGCATTGACTTCTGCTGAAAGATTAGTTGAGGCATACTTCCGTAGCAATCCATTAGGTAGAAACCAAGAACAACCTCCTCCTCCTCCTACAGTGGATGACAGAGATTCCTTTTCAAGCATTGGTGCTGTCATAAATTCAGAGAGTCAAGTTGACACTGCTGTAGAAATTGATTCCATGGTATCCTTGTCAACTTCCTCCTCTAGAAGGAGAAATGATGCTTCAAGAGTGTCTGATGTGGATAGTGGAGATTCCCGTGCTCCAAGGCGCAGACGACTGAACTGA 1332 0.4842 MEEEGSDAMNLDLNLGPGPELPSGSISNEAMNLDDWIGERISEAVRLRARQRWRWRHLPIPHPEVHVHIPPEATRHLHIPPEAHNISMELNQFLVNSGNGSALQAGEGSVAAEERMEEAPKACENINGVAEDEASQKKDDVEKGSGNDGDFFDCNICLDLAMDPVVTCCGHLFCWPCLYRWLHLHSDAKECPVCKGEVTLKSVTPIYGRANNARGPDDDSALKIPPRPQARRVESLRQTIQRNAFVALPVEEMIRRLGSRIDLTRDLVQPHEPDTARETADRTTTFLSRFLTTRGLRREQNVGAPPDDVVGMTQNNVSTSEAGTGDNRRVQSPLLRRTQSHRATLSTLSSALTSAERLVEAYFRSNPLGRNQEQPPPPPTVDDRDSFSSIGAVINSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1135 443 CDD RING-HC_AtRMA_like 152 196 - -
Apr4g1135 443 PANTHER OS01G0830200 PROTEIN 12 443 - -
Apr4g1135 443 MobiDBLite consensus disorder prediction 410 443 - -
Apr4g1135 443 MobiDBLite consensus disorder prediction 364 387 - -
Apr4g1135 443 ProSiteProfiles Zinc finger RING-type profile. 154 195 IPR001841 -
Apr4g1135 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 443 IPR045103 GO:0005783|GO:0006511|GO:0061630
Apr4g1135 443 MobiDBLite consensus disorder prediction 300 342 - -
Apr4g1135 443 MobiDBLite consensus disorder prediction 311 342 - -
Apr4g1135 443 SMART ring_2 154 194 IPR001841 -
Apr4g1135 443 ProSitePatterns Zinc finger RING-type signature. 169 178 IPR017907 -
Apr4g1135 443 SUPERFAMILY RING/U-box 149 207 - -
Apr4g1135 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 213 IPR013083 -
Apr4g1135 443 MobiDBLite consensus disorder prediction 421 443 - -
Apr4g1135 443 Pfam Zinc finger, C3HC4 type (RING finger) 154 194 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1135 Apr-Chr4 9678261 9680529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1135 1 434 C3H Transcription Factor Family AT3G58030 52.772 4.52e-133 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1135 K10666 - gmx:100811099 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1135 4 9678261 9680529 Apr4g1135 4 9678261 9680529 ECH