Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1134 ATGGAGCTGGCTCTGAGCTTAGGCGACACACCAAAGCCTTTCTCTTTGGCCACAAAATTACCCTCCATAGCACTTGAGGACGAGAGAAAGGGTTCATCAGATCCACCCCTTCAGCTCCACCTTCTTCCTTCAACACCCGTTCCTCCATCTCAACCTTCTTCACACTTTCCCATTCCATGGCTCATGCATGCACTGAGTACGGAACGTGCCACGTCAGAGGTTCCGACGAGGGTGTTGGACGTGAACCGATTCCAGTCGCCGCCGGTGGATGACACCGACGACGGTGCTGCACTTTCATCCCCCAACAGTGCAGTGTCATCTTTTCCGATGGATTTTTGTATCAGAAACAGTAATGCAGATGCAGCCAGAAACACTGAGGGTGCTGACAGAACTAGCGATGACGAAGAAAATGGCTCAACACGGAAGAAACTCAGACTCTCCAAGGAACAATCAGCTTTTCTCGAAGACAGCTTCAAAGAACACACCACTCTCAACCCTAAGCAGAAACTTGCTCTTGCAAAACAGTTAAATCTTCGTCCTCGTCAAGTTGAAGTTTGGTTTCAAAACAGAAGGGCAAGGACAAAGTTGAAGCAGACGGAAGTGGATTGTGAGTACTTAAAGAGATGCTGTGAGAGTCTGACAGAAGAGAATAGGAGGTTGCAGAAAGAACTGCAAGAACTGAGAGCTTTGAAAACTTCTCAACCGTTCTACATGCAGCTTCCAGCTACCACCCTAACCATGTGTCCCTCTTGCGAACGGGTTGCCACCAATAATAACAATGCTTCTCGAATCCCTGCTACGTTGTGTCATACAAAGCCCAGAATCTTGCCCTTATCTAATGCTCAAGCCCAACCGCAGGAGGCCCAGATGGCCCATCAGATTGCTTCATGA 891 0.486 MELALSLGDTPKPFSLATKLPSIALEDERKGSSDPPLQLHLLPSTPVPPSQPSSHFPIPWLMHALSTERATSEVPTRVLDVNRFQSPPVDDTDDGAALSSPNSAVSSFPMDFCIRNSNADAARNTEGADRTSDDEENGSTRKKLRLSKEQSAFLEDSFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNNNNASRIPATLCHTKPRILPLSNAQAQPQEAQMAHQIAS* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1134 296 SMART halz 197 240 IPR003106 GO:0006355|GO:0043565
Apr4g1134 296 Gene3D - 145 195 - -
Apr4g1134 296 Coils Coil 203 233 - -
Apr4g1134 296 MobiDBLite consensus disorder prediction 126 146 - -
Apr4g1134 296 MobiDBLite consensus disorder prediction 81 103 - -
Apr4g1134 296 CDD homeodomain 141 198 IPR001356 GO:0003677
Apr4g1134 296 SUPERFAMILY Homeodomain-like 133 198 IPR009057 -
Apr4g1134 296 CDD bZIP 190 229 - -
Apr4g1134 296 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Apr4g1134 296 MobiDBLite consensus disorder prediction 121 146 - -
Apr4g1134 296 Pfam HD-ZIP protein N terminus 33 108 IPR006712 GO:0005634
Apr4g1134 296 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Apr4g1134 296 SMART HOX_1 139 201 IPR001356 GO:0003677
Apr4g1134 296 MobiDBLite consensus disorder prediction 25 53 - -
Apr4g1134 296 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Apr4g1134 296 PANTHER - 27 270 - -
Apr4g1134 296 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Apr4g1134 296 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 27 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1134 Apr-Chr4 9664994 9666525 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1134 133 254 Homeobox Transcription Factor Family AT4G37790 81.967 1.37e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g1134 HD-ZIP_N 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1134 K09338 - gmx:100784703 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1134 4 9664994 9666525 Apr4g1134 4 9664994 9666525 ECH
Apr4g1134 4 9664994 9666525 Apr8g0748 8 7350984 7353262 PCT