Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1127 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGCAGCGGCCCCCCTGCAAACCAATACACTGCACCGCCTAGAGGGGGTATCACATACGGTGGTGGCAATGATAGAGGAGAGCCAAGGGGCAATGTTGCGAAGAGTGGTGCCCCGCAGAAAATATTGCCAATTGAGATACCCTCTATACCATTGAATGAGTTAAATAGGTTAACAGATAACTTCGGTTCAAAAGCTTTTATTGGTGAAGGTTCCTATGGTCGGGTTTACTATGCAAAATTGAGTGATGGTACTGATGCTGCAATCAAGAAGCTGGACACCAGTTCTTCTCAAGAACCTGATACTGATTTCGCGGCTCAGTTGTCAGTTGTTTCAAGACTGAAGCATGACAATTTTGTGGAGTTGATTGGATATTGCCTTGAGCAAGATAACAAAATTTTGGTATATCAACATGCAAGTCTTGGTTCTTTGCATGACGTATTACATGGAAGGAAAGGTGTACAAGGGGCTGAACCTGGTCCAGTTTTAAGCTGGAATCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTTGAATTTCTTCATGAAAAGGTTCAGCCTTCTATAGTTCATCGAGATGTTAGATCCAGCAACGTCTTGCTGTTCAATGACTATGAGGCCAAGATAGCTGATTTCAGCTTGACAAATCAGTCTTCTGACACAGCAGCTCGGCTACATTCAACAAGAGTCTTAGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACCCAGAAAAGCGATGTTTACAGTTTTGGCGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCAGTAGATCACACGATGCCCAAAGGGCAACAAAGTCTTGTAACTTGGGCTACTCCAAGGCTAAGTGAGGACAAAGTGAAACAATGTGTGGATCCTAAGCTAAACAATGACTATCCGCCAAAGGCTATTGCTAAGTTGGCAGCTGTTACAGCGCTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACGATTGTTGTCAAAGCGCTCCAGCCACTTCTCAATGCAAAACCGGCTGGTCCTGATTCTAATGCTTGA 1095 0.4447 MLCCGGAEEESSGPPANQYTAPPRGGITYGGGNDRGEPRGNVAKSGAPQKILPIEIPSIPLNELNRLTDNFGSKAFIGEGSYGRVYYAKLSDGTDAAIKKLDTSSSQEPDTDFAAQLSVVSRLKHDNFVELIGYCLEQDNKILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWNQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVTALCVQYEADFRPNMTIVVKALQPLLNAKPAGPDSNA* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1127 364 Pfam Protein tyrosine and serine/threonine kinase 76 349 IPR001245 GO:0004672|GO:0006468
Apr4g1127 364 SUPERFAMILY Protein kinase-like (PK-like) 50 349 IPR011009 -
Apr4g1127 364 SMART tyrkin_6 71 349 IPR020635 GO:0004713|GO:0006468
Apr4g1127 364 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Apr4g1127 364 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 363 - -
Apr4g1127 364 MobiDBLite consensus disorder prediction 1 45 - -
Apr4g1127 364 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1127 364 PIRSF ILK 40 357 - -
Apr4g1127 364 ProSitePatterns Tyrosine protein kinases specific active-site signature. 199 211 IPR008266 GO:0004672|GO:0006468
Apr4g1127 364 Gene3D Phosphorylase Kinase; domain 1 44 147 - -
Apr4g1127 364 Gene3D Transferase(Phosphotransferase) domain 1 149 359 - -
Apr4g1127 364 PANTHER OS03G0226300 PROTEIN 1 363 - -
Apr4g1127 364 CDD STKc_IRAK 77 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1127 Apr-Chr4 9609019 9611207 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1127 63 350 Receptor kinase-like Gene Family AT4G02010 47.766 8.62e-84 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Apr4g1127 PK_Tyr_Ser-Thr 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1127 - - gmx:100812507 702.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1127 4 9609019 9611207 Apr4g1127 4 9609019 9611207 ECH
Apr4g1127 4 9609019 9611207 Apr8g0745 8 7308288 7311553 PCT