Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1111 ATGAAGGACAAGGTGGATTCCCCTGTTGGTGTTCTGGAGGACTATTTGAAGAGCTCAGAGTCAGAAACAAGTTCCTCCAAAGAACCCACTGTGGAATCTGAGTCTCAAGAAAAGTCAAAACCCGGTTCTAAGTGGCATGCGTTTCTTCAATTGTTGAGGACCAGTTCAAAGAAGCCAATACCCACATTGCATCCTCTCAGTGTTCTCAAGCTTTCGAGAAGAATGAGCAGTAGCATGAGCGAGACTCTAATAGATGCAGATTCGCCCTTGCACAGGTCTCCACCGTGGAAGATTTTCACCCAGCATGAGATACAAACTGCAACCAATTATTTCGGCCAAGAAAATTTTATTGGTAAGGGTGGTTATGCTGATGTTTACAAAGGGTGTTTGCCAACTCGTCAATTAGTAGCGATTAAACGGCTAACACGAGGAGCAGAAAATGAAACTATAGGGGACTTCTTATCAGAACTTGGCATAATGGCGCATGTAAACCATCCCAATACTGCTAAGTTAGTTGGCTATGGAGTGGACGGAGGAATGCATTTAGTTCTTGAATTGTCTGAAAAGGGGAGCTTAGCTTCGGTGCTATATGGTTCCAAGGAGAAACTAGTTTGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTAAGGGAATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGAGATATAAAAGCAGCAAATATCTTGCTTACGGAGGAGTTTGAACCGCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCATCACACCGTTTCAAAAATTGAAGGGACTTTCGGTTACCTTGCTCCTGAATACTTGCTTCATGGGATAGTGGATGAGAAAACAGATGTATTTGCCTTTGGTGTAGTGCTATTAGAATTAGTCACTGGGCGGCGAGCACTTGATTCTTCACAGCAAAGCCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAACTATATTAGGGAGCTGATTGATTCTTCACTGGCCGATGACTTTGACTGTCGGCAGATTAATATTATGCTCTTGGCTGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGTCCCTCTATGAGACAGGTTGTACAGCTTTTGAATGGTAACCTTAGCTGCTTTAAGTTGACGAAGAAATCTCAACTTCCATTTTTCAGAAAAGTCTTTCAAGAAGAGCTCCTTGATTCAGAGTAA 1221 0.4201 MKDKVDSPVGVLEDYLKSSESETSSSKEPTVESESQEKSKPGSKWHAFLQLLRTSSKKPIPTLHPLSVLKLSRRMSSSMSETLIDADSPLHRSPPWKIFTQHEIQTATNYFGQENFIGKGGYADVYKGCLPTRQLVAIKRLTRGAENETIGDFLSELGIMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASVLYGSKEKLVWSIRQKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEEFEPQICDFGLAKWLPENWTHHTVSKIEGTFGYLAPEYLLHGIVDEKTDVFAFGVVLLELVTGRRALDSSQQSLVLWAKPLLKKNYIRELIDSSLADDFDCRQINIMLLAASLCIQQSSIRRPSMRQVVQLLNGNLSCFKLTKKSQLPFFRKVFQEELLDSE* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1111 406 MobiDBLite consensus disorder prediction 1 42 - -
Apr4g1111 406 Pfam Protein kinase domain 114 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1111 406 Gene3D Phosphorylase Kinase; domain 1 84 185 - -
Apr4g1111 406 SMART serkin_6 111 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1111 406 ProSiteProfiles Protein kinase domain profile. 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1111 406 PANTHER OS08G0249100 PROTEIN 1 405 - -
Apr4g1111 406 PANTHER PROTEIN KINASE FAMILY PROTEIN 1 405 - -
Apr4g1111 406 Gene3D Transferase(Phosphotransferase) domain 1 188 390 - -
Apr4g1111 406 ProSitePatterns Protein kinases ATP-binding region signature. 117 139 IPR017441 GO:0005524
Apr4g1111 406 SUPERFAMILY Protein kinase-like (PK-like) 96 394 IPR011009 -
Apr4g1111 406 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1111 Apr-Chr4 9396713 9399875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1111 99 378 Receptor kinase-like Gene Family AT1G53420 41.319 5.52e-66 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Apr4g1111 Pkinase 1.2e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1111 - - gmx:100818913 677.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1111 4 9396713 9399875 Apr4g0757 4 6173486 6176626 ECH
Apr4g1111 4 9396713 9399875 Apr8g1475 8 23639163 23641701 ECH
Apr4g1111 4 9396713 9399875 Apr4g1111 4 9396713 9399875 ECH
Apr8g0191 8 1542698 1546185 Apr4g1111 4 9396713 9399875 ECH
Apr1g1693 1 26611910 26615660 Apr4g1111 4 9396713 9399875 ECH
Apr4g1111 4 9396713 9399875 Apr8g0191 8 1542698 1546185 PCT