Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1110 ATGTCCCTTCTCTTCTATCTCTTTCTCTTTCTCTTCACTTTCTCTCAAACCCCTTCTCTGGCCGCAAACGACACCGTTCCATGTCCCCTCAACATCACCGTCCTCAGCGTCGTTGGCGGCGGTGCCAGACCCTCCTTCGACGCCAGAACACAGTGCCCTTACATTCTCCAAGCTCTCCACCTCCTCCAAGCGGATTTACTCCGCCGCACCGGCCTCTTCGTGCCGCCACTGAACTCCTCCGAATTGTGCTGGAACATGTTCCAATCCTTCATCAACCAATATGACTCCACCTTCGATGTTCGCTCCTCTTGTGGTCTTCAAACATCTTGGATCTCCCAGGGATGCATGAACATCACCACCAAACAACAGTTCGAAGCCCCCGTTCCTAACTCCACACTCCAAGCCGTTCAAGGAAACTGTAACCTATCACTTGAGAATAACGCTCCATGTGCCCTCTGCACTACTAAATTGTCCAGTTTGTTGTCCTACTTCAACGGAACAATGGTTGGCAACGTTTCCGATTGTAGGGCTTATACTGCTATTTATGCTGCTTCTCTTTCCGTTCAGTATGGACCCACCAACCCTGGAACTGCTAAATGCTTGTTTGGCCTTGATTTTTCCTCTTCCGGTTCTTCTGGTAAGCATCGAACCATTGTTATTGTGGTTGTTGTGGTTTTGTGTGTGTTGGGTTTGCTTCTGTCAGGTGGGTTTTGGGTTTACTTGAGATTGAAGAGGGGGAAGAAGGGTGGGAGAGAGAAGGGTGTTGGTGGAACTGAGATGAGTTTGGCTTCTGGGTTGGATTCGATGAACCAGAGTACTACTTTGATTAGGTTTACTTTTGATGACATTAAGAAGGCTACTAGGAATTTCTCAAGGGATAACATTATTGGGAGTGGGGGTTACGGGAATGTTTATAAAGGGTTGCTGTCGGATGGGACTCAGGTTGCGTTGAAAAGGTTTAAGAATTGTTCGATTGGTGGGGATACTAGTTTTGCTCATGAGGTTGAGGTTATTGCGAGTGTTAGGCATGTGAACCTTGTTGCCTTGAGAGGTTATTGTACTGCTACTACTAATTTAGAGGGTCATCAGAGGATTATTGTCACTGATTTGATGGAAAACGGGAGTCTTTATGATCATTTGTTTGGTTCTGCCAAGAAGAAACTAAGTTGGCCCATACGTCAAAAGGTTGCTCTAGGCACTGCTAGGGGCTTGGCTTATTTGCATTATGGGGCTCAACCTTCTATCATTCATAGGGATATTAAAGCTAGTAACATACTTCTTGACGAGAAGTTTGAGGCCAAGGTAGCGGATTTTGGGTTGGCAAAGTTTAATCCTGAGGGAATGACGCATATGAGCACAAGAGTAGCTGGAACTATGGGGTATGTTGCTCCCGAGTATGCCTTGTATGGACAGTTGACTGAGAGAAGTGATGTGTTCAGCTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACAGACGATGATGGCCAACCCTCCGCACTCACGGACATGGCTTGGTCATTAGTTAGAAATAGTAGAGCTTTGGATGTGATTGAAGATGGCATGCCAGAACCTGGTCCACCACAAGTTCTGGAGAAGTATGTGTTGGTTGCAGTACTATGTTCTCATCCGCAGTTATATGCTAGGCCAACGATGGATCAGGTCGTTAAAATGCTGGAGACAGATGATGAATCAGTACCCTCAATAGTGGAAAGGCCAATTCCTTTTATTGCCGGGAGGATTGATATTGAGAAATCTGCCCTTAGTAACTCAGGTCAGCTCTGCAGTCCAACCGGTTATCAAGCATATACATTACAAAATCGCCGCCCTTCTGATTCAAAGGAAGAAGAAGGAAGTTCGGCGACTGTGACCACAGATTGA 1896 0.462 MSLLFYLFLFLFTFSQTPSLAANDTVPCPLNITVLSVVGGGARPSFDARTQCPYILQALHLLQADLLRRTGLFVPPLNSSELCWNMFQSFINQYDSTFDVRSSCGLQTSWISQGCMNITTKQQFEAPVPNSTLQAVQGNCNLSLENNAPCALCTTKLSSLLSYFNGTMVGNVSDCRAYTAIYAASLSVQYGPTNPGTAKCLFGLDFSSSGSSGKHRTIVIVVVVVLCVLGLLLSGGFWVYLRLKRGKKGGREKGVGGTEMSLASGLDSMNQSTTLIRFTFDDIKKATRNFSRDNIIGSGGYGNVYKGLLSDGTQVALKRFKNCSIGGDTSFAHEVEVIASVRHVNLVALRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKKLSWPIRQKVALGTARGLAYLHYGAQPSIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTDDDGQPSALTDMAWSLVRNSRALDVIEDGMPEPGPPQVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDDESVPSIVERPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQNRRPSDSKEEEGSSATVTTD* 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1110 631 SUPERFAMILY Protein kinase-like (PK-like) 272 580 IPR011009 -
Apr4g1110 631 SMART serkin_6 290 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1110 631 Gene3D Phosphorylase Kinase; domain 1 258 369 - -
Apr4g1110 631 MobiDBLite consensus disorder prediction 610 631 - -
Apr4g1110 631 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 23 617 - -
Apr4g1110 631 Pfam SPARK 24 173 IPR043891 -
Apr4g1110 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 415 427 IPR008271 GO:0004672|GO:0006468
Apr4g1110 631 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Apr4g1110 631 Gene3D Transferase(Phosphotransferase) domain 1 371 575 - -
Apr4g1110 631 Pfam Protein tyrosine and serine/threonine kinase 293 564 IPR001245 GO:0004672|GO:0006468
Apr4g1110 631 PANTHER OS01G0253100 PROTEIN 23 617 IPR045271 GO:0004714|GO:0006468
Apr4g1110 631 CDD STKc_IRAK 296 565 - -
Apr4g1110 631 ProSiteProfiles Protein kinase domain profile. 290 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1110 Apr-Chr4 9371111 9373513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1110 1 616 Receptor kinase-like Gene Family AT2G48010 61.129 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Apr4g1110 PK_Tyr_Ser-Thr 7.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1110 - - gmx:100786298 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1110 4 9371111 9373513 Apr4g1110 4 9371111 9373513 ECH
Apr8g0192 8 1551422 1554733 Apr4g1110 4 9371111 9373513 ECH