Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1088 ATGACCATTATGTCAAAGGTGATGTGCAGGCCAACACAACCACTGAAAAATGTTCCCTCCAATGGGCAAAAGCAGAACATTAGGCAGAAAGAGAAGGTGGTGTTGGTGATGGGAGCAACAGGAACTGGAAAGTCAAGGCTTTCCATCGACCTAGCCAAATCTTTTCCAGCAGAAATCATAAACTCGGACAAAATGCAAGTCTACGAAGGGCTTGACATAGTCACAAACAAAATCACCAAAGAAGAGCAACTTGGGGTGCCACACCATTTGCTAGGAACACACAACCCCAACTTAGAGTTTACAGCTTCTGATTTCTGTGACATGGCATCACTCGCCATCGAATCAATCACGGATCGTGAGAAGCTTCCAATAATCGTGGGAGGCTCCAACTCCTACATTGAAGCCTTGGTCGATAAATTTGGTCCAAGGTACGATTGGTGTTGTCTTTGGGTGGACGTGTCAACGCCCGTTCTTCATTCCTATGTAGCACAGCGTGTTGATCACATGCTTAACAAGGGAATGGTGAATGAGTTAAGACCCTTTTTTAATCCCAACGGGGATTATTCAAGGGGCATAAGAAAAGCCATTGGGGTACCCGAATTTGACTCGTATTTTCGAAGGGAAGAGTTCTCCAACAACGAAACGAGACAGAGGTTGCTCCAGGAAGCGGTTGGTGAAGTGAAGAGTAATACGTGCAAATTGGCATGCAAACAAGTTGGGAGGATTCATAGGCTTCGAAGCGTTAAAGGGTGGAAGATTCATCGCGTTTGTGCCACGCCCGTGTTTCAAAAGCGTGGCCAAGAATCAAATCATGCATGGAAGAATATGGTGGCACAGCCTTGTGCCTCCGTAGTTGCCCAGTTTCTATACAATGATGATCATCATCTTCAGGGGTTGGTGGAGAGGTTGAGGAAGATGAGGGTGCAGAGTGGGCGAGGAGTTGTTGATGGGAGAGGAATAATTGGGGACCTTATTTGGCTCTCAATCTTTGGCACTATTGCCAGAAATGTTAGAGCCACTGTTACTATATTGAAAATCTCCACTCTCTTCCCCATCAGATCCTAG 1065 0.4601 MTIMSKVMCRPTQPLKNVPSNGQKQNIRQKEKVVLVMGATGTGKSRLSIDLAKSFPAEIINSDKMQVYEGLDIVTNKITKEEQLGVPHHLLGTHNPNLEFTASDFCDMASLAIESITDREKLPIIVGGSNSYIEALVDKFGPRYDWCCLWVDVSTPVLHSYVAQRVDHMLNKGMVNELRPFFNPNGDYSRGIRKAIGVPEFDSYFRREEFSNNETRQRLLQEAVGEVKSNTCKLACKQVGRIHRLRSVKGWKIHRVCATPVFQKRGQESNHAWKNMVAQPCASVVAQFLYNDDHHLQGLVERLRKMRVQSGRGVVDGRGIIGDLIWLSIFGTIARNVRATVTILKISTLFPIRS* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1088 354 Pfam IPP transferase 143 239 - -
Apr4g1088 354 Pfam IPP transferase 66 140 - -
Apr4g1088 354 Gene3D - 30 289 IPR027417 -
Apr4g1088 354 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 21 296 - -
Apr4g1088 354 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 155 253 - -
Apr4g1088 354 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 171 IPR027417 -
Apr4g1088 354 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 21 296 IPR039657 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1088 Apr-Chr4 9149004 9159690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1088 141 324 C2H2 Transcription Factor Family AT2G27760 28.910 1.74e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1088 K10760 - gmx:100799520 505.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1088 4 9149004 9159690 Apr4g1088 4 9149004 9159690 ECH
Apr4g1088 4 9149004 9159690 Apr8g0212 8 1703138 1704331 PCT