Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1085 ATGAGCTATCACATGAATAATGAAGATACACACAGAGGTTTGAAAAGAAAGTTGCCACAGATGAATCGAGGGCAAGATCAGGGATCTTTCAATATGAATTCTAGACCTTATGATAGGAACATGATTCCCCCTGGTTGGTTAGACTGCCCAGCGCATGGGCAAGAACTTGGATGCATAATCCCTTCTAAGGTTCCACTTGGTGAATCCTTCAATGATCACATTCCAAGTCAAAGATATACTCCCCAGCAAGCGATTCATCAGCAAAGAATCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACTCGTTACTATCCAATATCAGATTGGACAAAAGAAGGGATTGGGCATGTCAAGATAAGATGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTAAAAAAATTTTGTGATGAGGTTTTGGATTTTTGCTCCCAAATAACAAACACAAAGAAATATATACTTGTACATTGCACCCATGGGCATAATCGTACAGGCTACATGATTGTTCACTTTCTTGTGCGTACGGAATCTATTTCTGTCACTGAGGCAATAAATAAATTTGCTTGGGCACGTCGCCCTGGAATTTACAAGCAGGACTACATTGATGCCCTATACATGTTTTATCGTGAAAAGAAGCCTGAAGATCTTGTTTGTCCTCAAACTCCTGAATGGAAGAGACTCTCTGATCCTGATTTTCATGGTGTGGCTGTCCCAGCTGTAGACAATTATGGACACATTCCTGAAGAGGAGAATATTGTGAGGAATGAAGTATTGACAAACGATGATGTTTTGGGAGATCCAATTCCTTCAAACCAGCTGCGAGCAATGCAAGAATTTTGTTATCAACTGCTCAAGTTGGGCACTGTGGGAAGAGGACGTTCGCAGTTTCCTGGATCACACCCTGTTTCTCTGAACAGGGAAAATCTGCAACTCTTAAGACAACGATATTACTATGCAACATGGAAAGCTGATGGGACACGATACATGATGATGATTACTTGGGATGGATGTTATCTCATTGACAGAAAATTTCTTTTCCGAAGGATCAATATGCGGTTCCCTTGCAGATACTCAAATGGGGGTACACCTGAGAGGAATCACCACTACACATTACTTGATGGAGAGATGATTATTGACACAGATCCACTTACACAGAAGCAAGAGAGGAGATACCTCATTTATGATTTGGTCGCAATCAATCAAGTCTCTTTGACAGAGCTGCCATTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGTAACATGGAACGTGAAGGCCTTTCAAAGAGTATAAGTCCTTATTATCGATATGACTTGGAACCATTTAGCGTAAGGAGGAAGGGGTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCACATTCAGCAGATGGTCTTGTATTCCAGGGTTGGGATGATCCGTATGTCCCTCGCACACATGAAGGCCTTCTGAAGTGGAAATACCCTGAGATGAACTCTGTTGATTTCCTGTGTGAGGTGGGAGCAGTTGATCATCCCTTGCTTTTTCTGTTTGAACGGGGAAAGAAGAAGTTAATGGAAGAGAATGTTATTTTTAAAGATGCATCAGATATTTCCTCCTATTCAGGAAAGATCATTGAGTGCTACTGGGATTCTGGGGAACGTCATTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAACGATATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAACATCACAGAAGATGTCCTGTTGAATGAGATCAATGAGATCATTCGCCTACCGTTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAGCATATGGTCTCTTCAAGGCGCAAGTGA 1902 0.4117 MSYHMNNEDTHRGLKRKLPQMNRGQDQGSFNMNSRPYDRNMIPPGWLDCPAHGQELGCIIPSKVPLGESFNDHIPSQRYTPQQAIHQQRILGRELGLVIDLTNTTRYYPISDWTKEGIGHVKIRCKGRDAVPDDESVKKFCDEVLDFCSQITNTKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAWARRPGIYKQDYIDALYMFYREKKPEDLVCPQTPEWKRLSDPDFHGVAVPAVDNYGHIPEEENIVRNEVLTNDDVLGDPIPSNQLRAMQEFCYQLLKLGTVGRGRSQFPGSHPVSLNRENLQLLRQRYYYATWKADGTRYMMMITWDGCYLIDRKFLFRRINMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPLTQKQERRYLIYDLVAINQVSLTELPFYERWKLLEKEVIEPRNMEREGLSKSISPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSADGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLCEVGAVDHPLLFLFERGKKKLMEENVIFKDASDISSYSGKIIECYWDSGERHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEINEIIRLPLYADRIQRDIKAHQHMVSSRRK* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1085 633 Pfam Dual specificity phosphatase, catalytic domain 93 214 IPR000340 GO:0008138|GO:0016311
Apr4g1085 633 PIRSF mRNA_capping_HCE 29 633 IPR017074 GO:0004484|GO:0006370|GO:0140818
Apr4g1085 633 Gene3D DNA ligase/mRNA capping enzyme 264 501 - -
Apr4g1085 633 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 138 207 IPR000387 GO:0016311|GO:0016791
Apr4g1085 633 MobiDBLite consensus disorder prediction 1 30 - -
Apr4g1085 633 CDD RNA_5'-triphosphatase 45 211 - -
Apr4g1085 633 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 270 504 - -
Apr4g1085 633 CDD Adenylation_mRNA_capping 276 504 IPR001339 GO:0004484|GO:0005524|GO:0006370
Apr4g1085 633 ProSitePatterns Tyrosine specific protein phosphatases active site. 160 170 IPR016130 GO:0016311|GO:0016791
Apr4g1085 633 SUPERFAMILY Nucleic acid-binding proteins 506 618 IPR012340 -
Apr4g1085 633 PANTHER MRNA-CAPPING ENZYME-LIKE 4 633 - -
Apr4g1085 633 Pfam mRNA capping enzyme, C-terminal domain 508 601 IPR013846 -
Apr4g1085 633 Coils Coil 631 633 - -
Apr4g1085 633 Pfam mRNA capping enzyme, catalytic domain 305 503 IPR001339 GO:0004484|GO:0005524|GO:0006370
Apr4g1085 633 SMART dsp_5 68 215 IPR020422 GO:0006470|GO:0008138
Apr4g1085 633 Gene3D Protein tyrosine phosphatase superfamily 17 236 IPR029021 -
Apr4g1085 633 Gene3D - 502 610 IPR012340 -
Apr4g1085 633 PANTHER MRNA-CAPPING ENZYME 4 633 - -
Apr4g1085 633 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 42 230 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1085 Apr-Chr4 9119369 9128821 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1085 25 623 Protein tyrosine phosphatase (PTP) family AT3G09100 64.638 0.0 798
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1085 K13917 - gmx:100793183 1186.02