Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1078 ATGGCTACACCGCCAAACAGCAGGCTTCAAAGCATGTTGCAGGCTGCGGTGCAATCAGTTCAATGGACTTACAGCCTCTTCTGGCAACTTTGTCCACAGCAAGGGATTCTGACGTGGGGTGATGGATACTATAACGGAGCAATAAAGACAAGGAAGACGGTGCAAGCAATGGAGGTTAGCACTGAGGAAGCGTCTCTTCAAAGAAGCGAACAACTTAGAGAGTTATATGAATCGTTGTCCGTTGGGGACACAAACCTGCGAAGGCCTTCTGCTGCCTTGTCGCCGGAGGATCTAACGGAATCCGAATGGTTCTATTTGTTATGTGTCTCTTTCTCCTTTCGTCCTGGTTATGGGTTACCCGGAATGGCATATGCTAGGAGGCACCATTTATGGCTCACTGGAGCAAACGAAGCAAGCAGTAAAACATTTTCAAGAGCTATTCTTGCCAAGAGTGCTCATATACAGACAGTGGTGTGCATTCCGGTGTTGGAGGGCGTCGTTGAGTTGGGCACAACCGATAAGGTGGAAAAAGACCTTAAGTTCATCCAACACTTAAAGAGCTTCTTCATAGTCATAGATGAGCATCCTCCAATGGCAATGGCTGCACTATCAGAGTACTCTACTTCCAATCCCACTTCATCCTACCCACCCAATATTCCAAATCAAGACAACAATAACGTGAGCGATGATAATTATAAAGCTGAAGTTCAGTTGGATTCCGAACCAACCACTTTCCCAGCAAGCGAGTTAATGGAGCTTGACACGTTTGAAGACTTTCGGGTCGGGTCACCTGGAGATGGGTCCAACCACTTTGATTCGTTCCCCTCGGAAGAGTCAATGTCACTGTGTTCGCCAGGGTTGGAGCTGCTTCAACTTCAACCACCACCTTCACCACAGCCTCCGTCGGAAAGCTTAGCACAAGGTGACACGGACACCCATTACTCTCAAACAGTGTCCACTATCCTTCAAAAGAACTCAAGGTGGTGGCTAGATTCACCCTCCACCACCCACCTCACTGATTCCTTTCAATCAGCTTTCAACAAGTGGAGCACTGTTGCTAACAATGACCAACCTCACTTACACGTGGCGGTGACCCATGTCACCTCCCAATGGCTCCTCAAATACATTTTGTTTAGTGTCCCTTACTTGCATGCAAACCGTCTCAAACCCAAGGGTGCTTCGTCCTATGAGACCAGTCACGTCATGGCCGAGCGTCGCCGAAGGGAAAAGCTCAATGAGAGGTTCCTCATTCTAAGGTCAATGGTTCCTTTTATCACCAAAATGGACAAGGCATCTATTTTAGGAGACACCATCGAATATATTAAACAGTTGCGTGATAAGATTGAGAATCTCGAGGTGTGTGATTGCAACACAAGAAAGAGAAGAGTGAGAGAGGTTGAGGTTTCGATCATAGAGAGAGATGCGTTGTTAGAGGTGGAGTGTGTGCATAGGGAAGGGCTGTTGCTTGATGTGATCAAAGTGTTGAGAGAGTTAGGGATAGAAGTCGTAATGGTGCAGTCATCGGTTAAGGATGATGGAGTGTTTGTGGCGGAAATAAGGGCTAAGGTGAAGGAATATGTTAATGGGAAAAGGGTAAGTATTTTAGAAGTGAAGAAGCTTCTTAGCCAGATAATACCCCATCATGAGCCATGCACGTTTGCTTCCAATGATCATTTGAGCATGCGTTTGGACTTGGGATGCATGCATCTAGGGATGAATTAG 1722 0.4663 MATPPNSRLQSMLQAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSVGDTNLRRPSAALSPEDLTESEWFYLLCVSFSFRPGYGLPGMAYARRHHLWLTGANEASSKTFSRAILAKSAHIQTVVCIPVLEGVVELGTTDKVEKDLKFIQHLKSFFIVIDEHPPMAMAALSEYSTSNPTSSYPPNIPNQDNNNVSDDNYKAEVQLDSEPTTFPASELMELDTFEDFRVGSPGDGSNHFDSFPSEESMSLCSPGLELLQLQPPPSPQPPSESLAQGDTDTHYSQTVSTILQKNSRWWLDSPSTTHLTDSFQSAFNKWSTVANNDQPHLHVAVTHVTSQWLLKYILFSVPYLHANRLKPKGASSYETSHVMAERRRREKLNERFLILRSMVPFITKMDKASILGDTIEYIKQLRDKIENLEVCDCNTRKRRVREVEVSIIERDALLEVECVHREGLLLDVIKVLRELGIEVVMVQSSVKDDGVFVAEIRAKVKEYVNGKRVSILEVKKLLSQIIPHHEPCTFASNDHLSMRLDLGCMHLGMN* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1078 573 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 395 444 IPR011598 GO:0046983
Apr4g1078 573 PANTHER TRANSCRIPTION FACTOR TT8 8 547 - -
Apr4g1078 573 PANTHER TRANSCRIPTION FACTOR TT8 8 547 - -
Apr4g1078 573 MobiDBLite consensus disorder prediction 207 229 - -
Apr4g1078 573 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 189 IPR025610 -
Apr4g1078 573 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 395 454 IPR036638 GO:0046983
Apr4g1078 573 Gene3D - 391 453 IPR036638 GO:0046983
Apr4g1078 573 SMART finulus 401 450 IPR011598 GO:0046983
Apr4g1078 573 MobiDBLite consensus disorder prediction 259 316 - -
Apr4g1078 573 Pfam Helix-loop-helix DNA-binding domain 398 445 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1078 Apr-Chr4 9048349 9052058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1078 1 547 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 47.811 8.13e-157 457
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g1078 bHLH-MYC_N 1.6e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1078 - - aprc:113862120 1110.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1078 4 9048349 9052058 Apr4g1078 4 9048349 9052058 ECH