Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1068 ATGGAAAATCGCCACCCCGCCGCTAGACGAAGCTTGAAACGCAAGCTCGAACAGCAAAACGACTCAATGGAAGACCAAACAGATCGCAAGGTACTGCACCAAGATTTCTCTGCTAAGATTCTTCAACAAGTTTCTCTCCTCAATTCCACTTCCTCACACTCAAATCGCGCCGCCGTTAAGTCTGCCGTCCACGTCCTTTCCGAACTCGCCAATGACGAGGATCTTGTGGATACCATAGTGAATGGCGGTGCTGTTCCTGCTCTGGTTAAGCATCTAGACGCGCCATGCTCCGTGAAAGATGACAGCGACGGTGTCGTTGAGCCTTACCAGCACGAGGTGGAGAAAGAATGTGCCCTCGTCCTAGGGCTTATTGCTGTTAAACCAGAGTATCAGGAATTCATTGTTGATGCTGGAGCCTTGCCCTCTCTTGTAAATTTATTGAAGAGGCACAAGACAAGCGCCATTTCTCAATCACTTATTGGTCTTCTATGGAGAGTAGCGGATGCAATAACCAACCTTGCCCATGAAAATACCAGCGTTAAGACCCTTGTCAGGATGGAAGGTGGAATCCCCCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGAGGGCAGCTGCGGCGGCCTTGCGAACTCTTGCATTTAAAAACGATGACAATAAAATTCAGATAGTTGAATGCGACGCATTACCCACTCTTGTACTAATGCTTCGATCAGATGATCCCTCAATACATTATGAGGCGGTTGGTGTGATTGGAAATCTGGTTCACTCTTCACCAAATATTAAGAAAGACGTTCTTCTGGCTGGGGCTTTGCAGCCTGTCATTTGGTTGCTTAGGTCCCCCTGTTTGGAGAGTCAAAGAGAAGCAGCTCTTTTACTTGGTCAATTTGCCGCAACAGATTCAGATTGCAAGGTTCACATTGCCCAGAGAGGGTCTATTCAACCATTAGTTGACATGCTCAAGTCTTCAGATGTACAGCTTCGGGAAATGTCAGTTTTTGCACTTGGAAGATTGGCACAGGACTCACATAATCAAGCTGGCATTGCCCACAACGGAGGTATAGAGCCTCTGCTCAATCTTCTTGACTCGAAGGATGGGTCTCTTCAACATAATGCTGCTTTTGCTCTCTATGGTCTTGCTGATAATGAGGACAATGTGGCAGATATTATTAAGGCTGGTGGTTTTCAAAAACTGCAGGATGGGCATTTCAAAGTTCAACCTACTAAAGAGTGTGTAGCAAAGACATTAAAAAGATTAGAGGAGAAGATTCATGGGCGAGTACTGAAACACCTGATATATCTTATGCGCTTTGCCGAAAAAGGTGTTAAAACACGTGTAGCTATTGCTCTTGCTCATTTATGTTCTCCTCACGATCGAAAAACTATATTCATTGACAATAACGGATTAGAATTGCTGCTGCAACTTCTTGAATCTTCAAACGTAAAGCAGAAGGGTGATGCTTCCGCAGCGCTTCACATATTGGCTACCAAATCCAGATCTGTCTCTGTTGACGCTGCTCCTACATCCCCTACTCCCCAGATGTACCTGGGCGAGGAATATATAAACAATCCTAATCTTTCTGATGTCACATTCCTAGTTGAAGGTAGAAGTTTTTATGCTCACAGAGATTGTTTACTTTCTTCTGATATATTTCGCGCAATGTTTGACGGTGGTTACAGGGAAACGGAAGCCAAGCATATAGAGATTCCAAATATTACATGGGAAGTCTTTGAGTTGATGATGAGGTATATATACTGTGGAACAGTAGACGTCAACTTGGATATTGCGCAGGATCTTCTCAAAGCTGCTGATCAGTATCTTCTAGACGACCTTAAGCGTATTTGTGAATATGCTATTTCTCAGGATATTTCTGTGGAAAATGTATCACTAATGTACGAGATGTCGGAGGCTTTCAATGCTACTACATTAAAACATTCATGCATACTGTTTATGTTGGGGCAATTTGATAACCTAGTCGCCAAACCATGGTATTGTCGCCTGGTTCGTTGCATTTTACCAGACATACGTGAATTCTTCTCAACTTTACTCGTCAACGCTGATTCTGATTCTGATTCAGCTGACTCTTGA 2097 0.4368 MENRHPAARRSLKRKLEQQNDSMEDQTDRKVLHQDFSAKILQQVSLLNSTSSHSNRAAVKSAVHVLSELANDEDLVDTIVNGGAVPALVKHLDAPCSVKDDSDGVVEPYQHEVEKECALVLGLIAVKPEYQEFIVDAGALPSLVNLLKRHKTSAISQSLIGLLWRVADAITNLAHENTSVKTLVRMEGGIPPLVELLEFNDIKVQRAAAAALRTLAFKNDDNKIQIVECDALPTLVLMLRSDDPSIHYEAVGVIGNLVHSSPNIKKDVLLAGALQPVIWLLRSPCLESQREAALLLGQFAATDSDCKVHIAQRGSIQPLVDMLKSSDVQLREMSVFALGRLAQDSHNQAGIAHNGGIEPLLNLLDSKDGSLQHNAAFALYGLADNEDNVADIIKAGGFQKLQDGHFKVQPTKECVAKTLKRLEEKIHGRVLKHLIYLMRFAEKGVKTRVAIALAHLCSPHDRKTIFIDNNGLELLLQLLESSNVKQKGDASAALHILATKSRSVSVDAAPTSPTPQMYLGEEYINNPNLSDVTFLVEGRSFYAHRDCLLSSDIFRAMFDGGYRETEAKHIEIPNITWEVFELMMRYIYCGTVDVNLDIAQDLLKAADQYLLDDLKRICEYAISQDISVENVSLMYEMSEAFNATTLKHSCILFMLGQFDNLVAKPWYCRLVRCILPDIREFFSTLLVNADSDSDSADS* 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1068 698 Coils Coil 9 29 - -
Apr4g1068 698 Pfam Armadillo/beta-catenin-like repeat 219 258 IPR000225 GO:0005515
Apr4g1068 698 Pfam Armadillo/beta-catenin-like repeat 181 216 IPR000225 GO:0005515
Apr4g1068 698 Gene3D - 32 166 IPR011989 -
Apr4g1068 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 188 223 IPR000225 GO:0005515
Apr4g1068 698 ProSiteProfiles BTB domain profile. 530 596 IPR000210 GO:0005515
Apr4g1068 698 SUPERFAMILY POZ domain 521 623 IPR011333 -
Apr4g1068 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 138 188 IPR000225 GO:0005515
Apr4g1068 698 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 690 - -
Apr4g1068 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 355 397 IPR000225 GO:0005515
Apr4g1068 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
Apr4g1068 698 SUPERFAMILY ARM repeat 429 501 IPR016024 -
Apr4g1068 698 SMART arm_5 344 384 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 177 217 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 219 259 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 261 301 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 72 126 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 303 343 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 459 499 IPR000225 GO:0005515
Apr4g1068 698 SMART arm_5 127 175 IPR000225 GO:0005515
Apr4g1068 698 Gene3D - 426 509 IPR011989 -
Apr4g1068 698 Gene3D - 266 425 IPR011989 -
Apr4g1068 698 Pfam BTB/POZ domain 523 624 IPR000210 GO:0005515
Apr4g1068 698 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 272 IPR000225 GO:0005515
Apr4g1068 698 Gene3D - 167 265 IPR011989 -
Apr4g1068 698 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 690 IPR044282 -
Apr4g1068 698 SMART BTB_4 530 626 IPR000210 GO:0005515
Apr4g1068 698 Gene3D Potassium Channel Kv1.1; Chain A 511 655 IPR011333 -
Apr4g1068 698 SUPERFAMILY ARM repeat 45 403 IPR016024 -
Apr4g1068 698 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1068 Apr-Chr4 8941226 8946556 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1068 189 463 U-box Gene Family AT1G71020 31.469 1.85e-18 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Apr4g1068 BTB 2.2e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1068 - - gmx:100783124 935.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1068 4 8941226 8946556 Apr4g1068 4 8941226 8946556 ECH