Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1056 ATGAGGGAGGGGTTGCGATCTCAGAAAAGGGTCGAGAAACCGGAGAGTAGTGAGAGAGCGGTTCAGGAGAAAGGGAAGGGTAGCGATGTTTTTGATGATTCATGTGACGAGGGTCATGAAGGAGAGGCTATAAATTTAACTGCAGAAGAGAGGAAGAAGTTAATGGAGCGCATAAAAGAGCTAGAACGTCAACTATTTCTTGGTAGCTCAAGCGCAAACACTAACTTAGATGAAAACAGTGATTGTAGTATTAGAGAGAAGGGAGAAGGGTTGAAGGATCCAGTGATGATTGATGGTGGAGTGCCCTCGGCGTCAAAGACGAGTGATGATTGTGTTGGAGGAAAGAGAAAATTGGCTGACATTTATGAACCTGATATGACTCATTTTGAGTTGAATTGGGTTGGGGAGAATGAAAAAGGGAATGACATGAGTAGTTTGGAAGAGCAAGATCAATTAGTTCAATCAAATCCTCCAAATGATGACCAAAATAATGATTTTGTTATGGCACTCGAACGCATTGCAAGCTTTCAAAACCGTACCAAAGGTGTAAGGAGTTTAACTACGGTACATGGTGTGAATATGGAGAATGAAGCTAACGATGGTATGTGTCCAAAAAGTGCTCAAAAGAAAGAGGTATTAAAAGATCTGGGAGGTTCTCAAGCCAAGGGGAGTGAATTTTGGAAGCATTTGGAAACTGAGACCAATGCTATCAATGGGGCTGTTGGGGCTGAGAGAAGTGGAAGAAGCAAAACAAAGTTCTCAGTGAGTGAACAAATAGCAAATCAGCTCTCAGATGCGGGATGGGTAATTTTCTTTAGACCTAGCATTGAAAGCGAAAAGTACGATGATGCTGTGTATGTTAGTCCTGAAGGCAAGGCGCATTGGTCACTCACCTTGGCTTACAACACCCTTAAGCATCATTGTGAAGCCGGTGATGGTGAAGGCAAAGTATATGGACCAGGTTTTCGATTCAAACCAATACCAGAAGAGGATATGAATATACTAACTGGGGGAATGGCCAAGAATGGACAAAATGCAACGGGAGGAGGTGGAATTAGAGTAGTTGAAAAGAATGACAAAGTGGGAAAACAAAATGATGTGGGTTCTTCTTCTACAAGGAGGCTGAGGGATCGCAGGCCAAGAACAGCACAAAGGAAGAGGCGATATGACATACATAGAGAAAAACGAACTGTGATTACCTGGATGATTGATATGGGTGCAATTCAGCACAACGAGAGGGTTCTTTATATGGATCATGAAGGAAAATGTGCAGTTCTGGATGGTAGGATCACTAGAGATGGCATTCTGTGTGGGTGCTGTAATGGAATTGTATCCATTTCGAAGTTCGAAGCTCATTCAAGACTCGGACACTGTAATCCACTGACAAATATACATGTGGAGAGAGGAGCTTCTCTCATGCAATGCATGAAAGATGCATGGAATAGACAGGATGAATCTTATCGTAAAGATTTTCATTTCATTGATGTTAAGGGTGATGACCACAACGATGATGTTTGTTCTCTCTGTGGAGAGATCGGGGATCTCATGTGTTGTGATGGCTGCCCTTCAACTTTCCATCCAAGCTGCTTGGGTTTAGAAACAGTTCCATTGGGTGATTGGTACTGCATCCATTGCCGTTGCAAATTTTGTGGGTTGAATGGCGCAGAGCAAATAGACAACTTTAAAGGTTACTTCGAGTCTATGTTATACGGATGCCGTGTATGCGAAGAAAGATATCACAAATCCTGTCTTGAGGCCAGTTTCGCCAACATTGTTCATGGTCAACATGCATATTTATGTGGAGACAAATGTAAAGAGCTATGTGAGAGATTTGAAAGGCTTCTTGGGGTTAAACATGAAATAAACGATGGATTTTATTGGACTATTTTAAAACGGTCAGATATTGGTTATGATGATTCGCAGATAGAATCTCGTATGGTTGAATGCAATTCCAAACTAGCTGTTGCATTGTCGGCACTCAGCCATTTCAATGTTGAGTTGTTGATCTTACCAGCTATCCCACAACTCAAAAAAGCTTGGATTGGTGCTTTTGGGTTTGAGCCAATTGATACAATTAACAAGCAATTAATAAAGAAGATGAATATGTTGGTCTTCCCTCACACAGATACGCTGCAGAAAAAGATACCAAAGTGTGATTCTGCAGTTTCCAATCGTCACAATAGCCAGATTGCGCACTGGGGAGCAAATAACTGGAGTATGGCGGGTACATCTGGATCTCATTTTGTCTCTTCTTCTGGGAACCCTCCTTCAAATGCGATCCAGATAAACGATAGAGTCATGTCTGCTGAACCCGGTTCTTCACGACTTCCCCTTGGGCCAAGTGGTGCTACTAGAAATGCTAGGTTTCGCAATTAG 2376 0.4226 MREGLRSQKRVEKPESSERAVQEKGKGSDVFDDSCDEGHEGEAINLTAEERKKLMERIKELERQLFLGSSSANTNLDENSDCSIREKGEGLKDPVMIDGGVPSASKTSDDCVGGKRKLADIYEPDMTHFELNWVGENEKGNDMSSLEEQDQLVQSNPPNDDQNNDFVMALERIASFQNRTKGVRSLTTVHGVNMENEANDGMCPKSAQKKEVLKDLGGSQAKGSEFWKHLETETNAINGAVGAERSGRSKTKFSVSEQIANQLSDAGWVIFFRPSIESEKYDDAVYVSPEGKAHWSLTLAYNTLKHHCEAGDGEGKVYGPGFRFKPIPEEDMNILTGGMAKNGQNATGGGGIRVVEKNDKVGKQNDVGSSSTRRLRDRRPRTAQRKRRYDIHREKRTVITWMIDMGAIQHNERVLYMDHEGKCAVLDGRITRDGILCGCCNGIVSISKFEAHSRLGHCNPLTNIHVERGASLMQCMKDAWNRQDESYRKDFHFIDVKGDDHNDDVCSLCGEIGDLMCCDGCPSTFHPSCLGLETVPLGDWYCIHCRCKFCGLNGAEQIDNFKGYFESMLYGCRVCEERYHKSCLEASFANIVHGQHAYLCGDKCKELCERFERLLGVKHEINDGFYWTILKRSDIGYDDSQIESRMVECNSKLAVALSALSHFNVELLILPAIPQLKKAWIGAFGFEPIDTINKQLIKKMNMLVFPHTDTLQKKIPKCDSAVSNRHNSQIAHWGANNWSMAGTSGSHFVSSSGNPPSNAIQINDRVMSAEPGSSRLPLGPSGATRNARFRN* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1056 791 SMART PHD_3 505 546 IPR001965 -
Apr4g1056 791 SMART PHD_3 547 605 IPR001965 -
Apr4g1056 791 MobiDBLite consensus disorder prediction 146 161 - -
Apr4g1056 791 MobiDBLite consensus disorder prediction 1 43 - -
Apr4g1056 791 SUPERFAMILY FYVE/PHD zinc finger 497 550 IPR011011 -
Apr4g1056 791 Coils Coil 44 64 - -
Apr4g1056 791 MobiDBLite consensus disorder prediction 769 791 - -
Apr4g1056 791 MobiDBLite consensus disorder prediction 91 112 - -
Apr4g1056 791 PANTHER PHD FINGER PROTEIN 12 389 658 IPR042163 GO:0003714|GO:0045892
Apr4g1056 791 PANTHER PHD FINGER PROTEIN 12 11 386 IPR042163 GO:0003714|GO:0045892
Apr4g1056 791 PANTHER PHD FINGER PROTEIN 12 658 726 IPR042163 GO:0003714|GO:0045892
Apr4g1056 791 ProSiteProfiles Zinc finger PHD-type profile. 503 548 IPR019787 -
Apr4g1056 791 MobiDBLite consensus disorder prediction 358 388 - -
Apr4g1056 791 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 495 623 IPR013083 -
Apr4g1056 791 Pfam Tify domain binding domain 428 478 IPR032308 -
Apr4g1056 791 MobiDBLite consensus disorder prediction 139 161 - -
Apr4g1056 791 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 658 726 - -
Apr4g1056 791 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 389 658 - -
Apr4g1056 791 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 11 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1056 Apr-Chr4 8757858 8764721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1056 248 660 PHD Transcription Factor Family AT5G36670 35.566 5.27e-81 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1056 - - aprc:113862113 1624.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1056 4 8757858 8764721 Apr4g1056 4 8757858 8764721 ECH
Apr4g1056 4 8757858 8764721 Apr8g0239 8 1884727 1893720 PCT