Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1042 ATGCTCGCTTCTCATAACTGCAGCTGCAAATTTCTCTTTAACTCTGCCAATTTGCGTTTCCAATTTCATAAATTCAGGAATGTTACTTTATCATTGATAGTAGGAGGTGAGGTGGTTATAGTTCAAATGGAGCAGTATGAAATTCTGGAACAGATTGGCAAAGGTGCTTTTGGTTCTGCTTTGCTTGTGAGGCACAAGCATGAAAAGAAAAAATATGTCCTTAAGAAGATCCGCCTTGCTCGCCAATCTGACAGATCCCGCAGGTCTGCCCACCAGGAGATGGAGCTTATATCTAGAGTTCGAAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGATATTGTGAAGGAGGAGATATGGCTGAAACTATTAAAAAGGCTAATTGTGTTAACTTTCCTGAAGAGTGTTCAAATATATTCTTGACTAAAGATCAAGATATACGGCTAGGTGACTTTGGTCTTGCTAAGATGTTGACATCTGATGATCTTGCTTCCTCAGTTGTTGGGACTCCGAGTTATATGTGCCCAGAGCTTCTTGCTGACATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATTTATGAAATGGCTGCTCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTGATTAACAAAATAAACAAGTCTATAGTAGCTCCACTGCCAACTATGTATTCTGCTGCTTTTCGAGGGCTTGTCAAAAGTATGCTGCGGAAAAATCCAGAGCTTAGACCAACTGCTGCAGATTTACTAAATCATCCGCATCTTCAGCCTTACATTCATAAAATTCATCTAAAATTAAACATCCCTAGAAGAACTACTTTTCCATTCCAATGGCCTGAGTCAAATTATGTAAGGAGAACTCGGTTTGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAGCAATGACGGGGCCTTCAATCCTAGTATTTCTGAAACTGAACAAGGTTCTTTATGTTCTACTCAAAGAGCACATGGATTATCCACTGGTTCTGAAGAGAAGCTCTATGAACTGTCTGTTGGACGTGTCCATGACAAATGTGACAGTGACAAATCAGAAGTCACTAAGTTCTCAAGTGTTAAGAGAACACCAAGATTGAGAGCAGTTAAAGATTCCAGTACTGCCAAAAGGCAAACAATGGCACCATCCAAGATACTGCATACTGATCCAAAGCGTGATTTGCTTCCAGTTTCTCATGCACAATCTGGAAAGTTTTCCACACCAACTCGTAGAGCATCCCTTCCACTGCCTCCAAGAGCCACAACCACAGAAAACTTGTACACCAATGTTGGTCTCCTTGGTAGTGTGAACTCTCCTGATGTTTCTGTTAATGCACCACAAATTGACAAGATTGTAGAATTCCCAATGGCCTCCTGTGAGGATCACTTTTTCTCTATTTGTGGACCATCTTCAACATCAGCGCGCTGCTCTTCAAGCTCAGCAGGGAGTGCTGATTGCTCAATCACAAAGGACAAGTGTACAATCCAGGTGGAGAAAGTTACTGTCCCTACCACTGCTAGTGATGCTTGCCATGGTCCAAAGGGCAGTGAATGCTCTTCTGAACATGTGATAGCTGATGTTTCAAGCCCTTCTGAATTGCATCAGCAACGGTTTGACACCTCATCATACCAGCAACGTGCCGAGGCATTGGAGGGGTTGCTGGAATTCAGTGCCAGGCTCCTACAACAACAGAGGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTCAAAGAAACTGCGGTCTAA 1875 0.4229 MLASHNCSCKFLFNSANLRFQFHKFRNVTLSLIVGGEVVIVQMEQYEILEQIGKGAFGSALLVRHKHEKKKYVLKKIRLARQSDRSRRSAHQEMELISRVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAETIKKANCVNFPEECSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMAAHKPAFKAFDMQALINKINKSIVAPLPTMYSAAFRGLVKSMLRKNPELRPTAADLLNHPHLQPYIHKIHLKLNIPRRTTFPFQWPESNYVRRTRFVEPESVSTLSDQDKCLSFSNDGAFNPSISETEQGSLCSTQRAHGLSTGSEEKLYELSVGRVHDKCDSDKSEVTKFSSVKRTPRLRAVKDSSTAKRQTMAPSKILHTDPKRDLLPVSHAQSGKFSTPTRRASLPLPPRATTTENLYTNVGLLGSVNSPDVSVNAPQIDKIVEFPMASCEDHFFSICGPSSTSARCSSSSAGSADCSITKDKCTIQVEKVTVPTTASDACHGPKGSECSSEHVIADVSSPSELHQQRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETAV* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1042 624 Gene3D Phosphorylase Kinase; domain 1 23 125 - -
Apr4g1042 624 MobiDBLite consensus disorder prediction 394 418 - -
Apr4g1042 624 ProSiteProfiles Protein kinase domain profile. 46 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1042 624 Gene3D Transferase(Phosphotransferase) domain 1 146 312 - -
Apr4g1042 624 ProSitePatterns Protein kinases ATP-binding region signature. 52 75 IPR017441 GO:0005524
Apr4g1042 624 SUPERFAMILY Protein kinase-like (PK-like) 42 328 IPR011009 -
Apr4g1042 624 CDD STKc_Nek 45 273 - -
Apr4g1042 624 PANTHER SERINE/THREONINE-KINASE NEK4 43 146 - -
Apr4g1042 624 PANTHER SERINE/THREONINE-KINASE NEK4 147 613 - -
Apr4g1042 624 Pfam Protein kinase domain 46 139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1042 624 Pfam Protein kinase domain 148 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Apr4g1042 624 MobiDBLite consensus disorder prediction 425 444 - -
Apr4g1042 624 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 147 613 - -
Apr4g1042 624 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 43 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1042 Apr-Chr4 8618933 8626353 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1042 52 274 MAP Kinase Kinase Kinase AT1G53570 28.854 2.71e-26 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Apr4g1042 Pkinase 3.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1042 K08857 - gmx:100792678 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1042 4 8618933 8626353 Apr4g1042 4 8618933 8626353 ECH
Apr4g1042 4 8618933 8626353 Apr8g0256 8 2066333 2071463 PCT