Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1038 ATGAATTATCTCTACCCAGTGAAAGAAGAGTACTTAGAATCACCACCACCACAACCATCATCATCATCAACGTCTTACACAGACGGTGATGAAGAATCAATGGTTTCTCTTCCAAGGCCAATGGAGGGTCTTCATGACATAGGACCACCCCCATTTCTGACGAAGACCTTCGATGCAGTGGAAGACCCCACCACAAGTCACATAGTTTCATGGAGCCGAAGCGGTATCAGCTTTGTGGTTTGGGATCCACACGCTTTCTCCAGAGACCTTCTTCCCAGATACTTCAAACACAACAATTTCTCAAGCTTTGTTAGACAACTAAACACATACGGTTTTAGGAAAATTGATCCTGATAGATGGGAGTTTGCAAATGAAGGATTCCTGAGAGGGCAAAGGCACTTGTTGGGAAACATAAGGAGAAGGAAGCAACCATCACAACCTTCTACTTCCCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGACTTGATGAAGAGGTTGATCGTTTGAGGCGTGACAAGCAGGTGTTAATGGTGGAGCTTGTGAGGCTTAGACAGCAGCAACAGAACACAAGGTCTTATCTTGAGGCAATGGAGGAAAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCTTTGAAAAATCCAATCTTTATACAGCAGCTACTTCAACAAAAGGATAAAAGGAGGGAGCTTGAGGAGGCCATGTCTAAGAAGAGGAGAAGGCCAATTGAGCAAGGACCTCGTGGTGTTGGAGAATCAAGCAGTGGAGGTGAAAGAAGGAACAGTGTTAAAGCTGAGCCCCTAGTGTTTGGGGAATATGGGTTTGAAGTTTCAGAGTTGGAAGCGCTAGCTATGGAGATGCAAGGTTTTAGAAGGGGTAGGAGAGAACAAGAGGAAGAGAATGAGGAACTAGAATCACAAGAGAGGCTAGAGAAAGAGCTTGATGAAGGGTTTTGGGAAGAACTGTTTAGCGAGAGTTTTGAGGGTGAATTAGACATTCCAACGTCTCAAGGGGATGATGAAGATGTTAATGTGTTAGCAAATCGCTTAGGTTACTTGGGTTCAAGTCCAAAGAGAAATCAAGATAAACCTTTTTGA 1128 0.4397 MNYLYPVKEEYLESPPPQPSSSSTSYTDGDEESMVSLPRPMEGLHDIGPPPFLTKTFDAVEDPTTSHIVSWSRSGISFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWEFANEGFLRGQRHLLGNIRRRKQPSQPSTSQQAQGHCVEVGRFGLDEEVDRLRRDKQVLMVELVRLRQQQQNTRSYLEAMEERLRGTEIKQQQMMAFLARALKNPIFIQQLLQQKDKRRELEEAMSKKRRRPIEQGPRGVGESSSGGERRNSVKAEPLVFGEYGFEVSELEALAMEMQGFRRGRREQEEENEELESQERLEKELDEGFWEELFSESFEGELDIPTSQGDDEDVNVLANRLGYLGSSPKRNQDKPF* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1038 375 Coils Coil 290 327 - -
Apr4g1038 375 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 MobiDBLite consensus disorder prediction 239 256 - -
Apr4g1038 375 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 20 356 - -
Apr4g1038 375 Gene3D - 45 142 IPR036388 -
Apr4g1038 375 MobiDBLite consensus disorder prediction 301 321 - -
Apr4g1038 375 Coils Coil 169 203 - -
Apr4g1038 375 Coils Coil 231 251 - -
Apr4g1038 375 MobiDBLite consensus disorder prediction 239 273 - -
Apr4g1038 375 MobiDBLite consensus disorder prediction 15 31 - -
Apr4g1038 375 ProSitePatterns HSF-type DNA-binding domain signature. 91 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Apr4g1038 375 MobiDBLite consensus disorder prediction 1 39 - -
Apr4g1038 375 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Apr4g1038 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 20 356 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1038 Apr-Chr4 8579690 8583436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1038 33 370 HSF AT3G22830 55.827 3.56e-131 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Apr4g1038 HSF_DNA-bind 9.9e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1038 K09419 - gmx:100794264 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1038 4 8579690 8583436 Apr8g0262 8 2118721 2121579 PCT