Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1037 ATGTTTCCCACAGCTATTTCCAATTCAACTTCTTTGTCCGAGGATGCTAGTGTTTCTTCTGGAACAAAAATTCAGGACTTGGGTGGACTCAATCACGTGGTCTCAAATATTTGTCCTCAGCAACCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGTAATCCAGACCCAGATGCTGAAGTGATTGCCTTATCCCCAAAGACCCTTTTAGCCACCAACAGATTTGTTTGTGAGATCTGCCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGTCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAGCAAGGAGGTGAAAAAGAAAGCCTACGTTTGCCCTGAGCCTTCATGCGTTCACCACAACCCCTCTAGGGCTCTTGGGGATCTTACAGGAATCAAGAAACACTACTGTAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCCAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCTAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACCCTTTTTTCCAGGAAGGATAGCTTCATTACTCATAGGGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGAATATCAGCAAACCAGTTAGTAGCCACCAACACAACAAACCCATTAGCTCAATCTCTCTTTCTATTCCAAACCCAACAAAACTTCCAAAACCACCAAATCACCAATTTCAACCACTGGGATTCATCTCAAGAAAACCCTAACCCTAGCAACATTGCCACTGCCCTTCACATCAAACCAGAAGCTCAAAATTTTCACAACCCCACACCCTCTTCTCCTTCACCACTCCTTCAACAACCACATAATGAACAACCTCCCAACAAGAGCATGATAACCTCAACCTTCGGGAACCTCCACGTGCCCAGCGCTGCCACGTCAGCATACATGTCAGCCACTGCACTGCTTCAAAAGGCTGCAACAGTTGGAGCCGCTGCTATCACGGGCCTGGGCCCGGGCCCTGCTGCTGTTGGTGTCGGGCAACACCGGTCAATGTGTCACGTGACTCAGCTCGGCACGGGCGAGTTCGGAACACTGAGTCAACTCGACCCGGTGGTGCCAGATTACATGAGAGGGTTCCCCATTCGGAGCCTCAAGAGTGACCGTCTCACTCGGGACTTTCTGGGACTCACGGGAGATGCTAACGGTGGAGTTGACGGAGGAAACGGCGGCGCCGTTGACGTTAGCATGAACGTGAAGGATATGCTGACGTTCACGGGGGGTGTAGAGTACCACCAACCTCACTCTCAACATCACCATCACGCGCTGATGAAGCCCCAACAACGCTTTGGTTTCCTTGGGACAACCACTGCCCCCGAGACGTGGGGGAATTGTTGA 1395 0.4925 MFPTAISNSTSLSEDASVSSGTKIQDLGGLNHVVSNICPQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARISANQLVATNTTNPLAQSLFLFQTQQNFQNHQITNFNHWDSSQENPNPSNIATALHIKPEAQNFHNPTPSSPSPLLQQPHNEQPPNKSMITSTFGNLHVPSAATSAYMSATALLQKAATVGAAAITGLGPGPAAVGVGQHRSMCHVTQLGTGEFGTLSQLDPVVPDYMRGFPIRSLKSDRLTRDFLGLTGDANGGVDGGNGGAVDVSMNVKDMLTFTGGVEYHQPHSQHHHHALMKPQQRFGFLGTTTAPETWGNC* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1037 464 Gene3D Classic Zinc Finger 144 208 - -
Apr4g1037 464 Gene3D Classic Zinc Finger 54 123 - -
Apr4g1037 464 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Apr4g1037 464 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Apr4g1037 464 SMART c2h2final6 75 97 IPR013087 -
Apr4g1037 464 SMART c2h2final6 151 171 IPR013087 -
Apr4g1037 464 SMART c2h2final6 116 146 IPR013087 -
Apr4g1037 464 MobiDBLite consensus disorder prediction 271 294 - -
Apr4g1037 464 MobiDBLite consensus disorder prediction 269 294 - -
Apr4g1037 464 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Apr4g1037 464 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 443 - -
Apr4g1037 464 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1037 Apr-Chr4 8565991 8569992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1037 15 453 IDZ Gene Family AT4G02670 51.106 1.17e-134 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Apr4g1037 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1037 K25870 - gmx:100788975 672.159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1037 4 8565991 8569992 Apr8g0263 8 2131524 2135258 PCT
Apr8g1394 8 21396396 21400741 Apr4g1037 4 8565991 8569992 PCT