Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1021 ATGGAGCTGAATCTCAAGGCCACAGAATTGAGGTTGGGATTACCCGGCAGTGACGAGCCTGAGAAAACTTCATGCAGTGGCTTTGTTGTTAGAAGCAGCAAGAGATCTTCACCGGAAGCCAGTGTTGAAGAATCCATGTGCAAAAGCAACGTTAACTCTAGTGGTTGTGATTCAACAACCACAAGTGATCATGACCAAGACAGTGTCCAACCTGCAAAGGTTCAAGTAGTGGGATGGCCACCAATCAGATCTTTTAGGAAGAATAGTTTACAACAGAAGAAGGTGGAACAAGGTGATGGAGCTGGAATGTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACGAGACCTACGCAGAACTACTCAAAGCCTTGGAAAATATGTTCAAGTGCACATTCGGTGAATATTCAGAAAGGGAAGGTTACAATGGATCTGAATACGCTCCTACTTATGAGGACAAGGATGGTGATTGGATGCTTGTTGGAGATGTTCCATGGAACATGTTTGTGTCCTCCTGCAAGAGACTGAGAATAATCAAAGGATCAGAAGCAAAGGGGTTGGGTTGTTCATGA 597 0.4456 MELNLKATELRLGLPGSDEPEKTSCSGFVVRSSKRSSPEASVEESMCKSNVNSSGCDSTTTSDHDQDSVQPAKVQVVGWPPIRSFRKNSLQQKKVEQGDGAGMYVKVSMAGAPYLRKIDLKVYETYAELLKALENMFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1021 198 Pfam AUX/IAA family 8 196 IPR033389 -
Apr4g1021 198 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 196 IPR003311 GO:0005634|GO:0006355
Apr4g1021 198 MobiDBLite consensus disorder prediction 1 73 - -
Apr4g1021 198 ProSiteProfiles PB1 domain profile. 102 194 IPR000270 GO:0005515
Apr4g1021 198 MobiDBLite consensus disorder prediction 26 69 - -
Apr4g1021 198 Gene3D - 97 198 - -
Apr4g1021 198 SUPERFAMILY CAD & PB1 domains 99 186 - -
Apr4g1021 198 PANTHER AUXIN-INDUCED PROTEIN 2 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1021 Apr-Chr4 8403435 8404834 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1021 93 195 B3 DNA Binding Superfamily AT2G46530 36.893 4.52e-13 65.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr4g1021 AUX_IAA 1.8e-59 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1021 K14484 - gmx:100792134 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1021 4 8403435 8404834 Apr8g0281 8 2350266 2351744 PCT