Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1020 ATGGAGGTTGGCCTGAAGAAGGAAAAGATGGGGTTTGAGGAAACTGAGCTAAGGCTTGGGTTGCCTGGAAACGGAGCCACAGGGAGTGAAGAAGTCGTAAGGAAGAGAGGATTTTCTGATACTGAAGCTGAAACAACCACAGTGGATTTGATGCTTAATCTCTCTTCTAATATGGAAGCAACCACTGTGGCAGATCCGAGTGATAAGCACAAGACTTTGCCTAAGGAGAAGACCCTTCTGCCTGCAGATCCAGCTAAGCCTCCGGCCAAGGCGCAGGTGGTGGGTTGGCCACCAGTCCGGTCCTTCCGGAGGAACATGTTAGCAGTGCAAAAGAGCGTTGGAGAGGAGAGTGAGAAAAACATAAGCCCTAATGCAAGCTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTATAAGAGTTACCCAGAGCTCTCTGATTCTTTAGGCAAAATGTTCAGCTCCTTCACCATAGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGCAAGCTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTAATTCATGCAAGCGTTTACGTATCATGAAAGGAAAGGAGGCTATTGGTCTGGCACCAAGAACGATGGAGAAATGCAAGAACAGGAGCTACTAG 735 0.4707 MEVGLKKEKMGFEETELRLGLPGNGATGSEEVVRKRGFSDTEAETTTVDLMLNLSSNMEATTVADPSDKHKTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRRNMLAVQKSVGEESEKNISPNASFVKVSMDGAPYLRKVDLKMYKSYPELSDSLGKMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVNSCKRLRIMKGKEAIGLAPRTMEKCKNRSY* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1020 244 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 236 - -
Apr4g1020 244 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 236 IPR003311 GO:0005634|GO:0006355
Apr4g1020 244 Pfam AUX/IAA family 14 234 IPR033389 -
Apr4g1020 244 Gene3D - 120 237 - -
Apr4g1020 244 SUPERFAMILY CAD & PB1 domains 115 224 - -
Apr4g1020 244 MobiDBLite consensus disorder prediction 19 40 - -
Apr4g1020 244 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1020 Apr-Chr4 8389895 8393104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1020 115 233 B3 DNA Binding Superfamily AT4G23980 33.613 1.47e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Apr4g1020 AUX_IAA 2.3e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1020 K14484 - gmx:100810013 400.979