Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1012 ATGTCGAATCAGGTGGTGAGAGTGAGAAGGGACACGATTGCAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGAGAAGCTACCACCATATCCGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTATGATAAAATTACAGATGAGGAATTAGAATCCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCGCTCGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCTCTAAAGGGAAGAAAGGTGAAGGCACCTGAAGTTGTCACCTCAGTACCATTGCCAGCTAGAAGAAAGGAGAGATCTCTTTCATCTTTGGTAGTCAGCACTCCAAGGGTATCTTCACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGACCACTACTTTTTCCATTGAAAAGCCCATTAAAAAAGAGGAAGAATTGCTGGAAGATCATCCTGAGAGTTCGAGCTCACCTGATACTTCAAATAAGTTTGCTCAGAATTCTGGACAGAGTTTGTCCCCTCATGAGGGTAGTCAATCTGCACCCAATAAAGGATCAGAGAATGGTGCTGAACCAGGGGATGCAAAACTGGATCTTTGGAAACCATTGAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTTAAGTCTAATGTGCAAGGTTCTGATGCCAAACTGGAAACCATTCAAGTCAATGAGAGTGACTCTCAAGTGCAGAAACCCAAAATTAAGGAAAATAAACGCAAGGCAAAAATTGAGGATGAAAAGATTGGCCCTTATCCTGTCTCTTCAGATACAGCAAAACCCAATAAATTGCGCAGAATACGCAAAAAAAAGGAGCCTGCTTTTGGAGAATCTGGCATATCACCCCAAGCTGTGCTCGATTCTACCAGCAATAGAATCTTAAGGACTAGTCCGATTTGGTTCTCCTTGGTAGCTTCTGAAAACCAGGAAGGAGATGCACCCTTGCCCCAAATTCCAGCAAGTTATGTGAGAATAAAGGATGGTAGCGTGCCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCGGTTACATAATTTGGTTGAGTTGTGGCTGGAAACGGCATCCACATCACAGCGAATCCCAGCAACTATTGGGTCCTCAGCAAAGGATTTTGTGATGGTCCTGGCTTATGCTCGCAAGGCCAACAAATGCAAACACTGA 1293 0.4339 MSNQVVRVRRDTIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELESCPICNIDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPEVVTSVPLPARRKERSLSSLVVSTPRVSSQATMTGRRTKPTRKASGLRTTTFSIEKPIKKEEELLEDHPESSSSPDTSNKFAQNSGQSLSPHEGSQSAPNKGSENGAEPGDAKLDLWKPLNCLVEVASRSKSFKSNVQGSDAKLETIQVNESDSQVQKPKIKENKRKAKIEDEKIGPYPVSSDTAKPNKLRRIRKKKEPAFGESGISPQAVLDSTSNRILRTSPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLRLHNLVELWLETASTSQRIPATIGSSAKDFVMVLAYARKANKCKH* 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1012 430 MobiDBLite consensus disorder prediction 109 208 - -
Apr4g1012 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Apr4g1012 430 MobiDBLite consensus disorder prediction 166 198 - -
Apr4g1012 430 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Apr4g1012 430 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 - -
Apr4g1012 430 SMART ring_2 19 59 IPR001841 -
Apr4g1012 430 MobiDBLite consensus disorder prediction 112 147 - -
Apr4g1012 430 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Apr4g1012 430 MobiDBLite consensus disorder prediction 149 165 - -
Apr4g1012 430 SUPERFAMILY RING/U-box 14 83 - -
Apr4g1012 430 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Apr4g1012 430 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1012 Apr-Chr4 8310226 8316439 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1012 3 347 C3H Transcription Factor Family AT2G30580 54.467 1.29e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1012 K16277 - gmx:100793731 751.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g1012 4 8310226 8316439 Apr8g0290 8 2425132 2430569 PCT