Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g1009 ATGCCTGTCCACGCTCTTCCAATTCCCGATCACTCTCCGCCGTCCTCAAAGCCCAAGCCCAAAGAGGCCCATTTCAGGGGCGTCCGCAAGCGTCCCTGGGGCCGCTTTGCCGCCGAGATCCGCGATCCCTGGAAAAAAACCCGAAAGTGGCTTGGCACATTCGACACCGCCGAGGAGGCCGCTAGGGCCTACGACACCGCTGCCAGAACGCTCCGTGGGCCCAAGGCCAAGACCAACTTCGCCTACGTCGTTTCTCCACCACTTCATCTCCCTCCTGCCCAAGCTCAAGACCAACTTGCCAGGCCGCTCGAGTTTTGGGCCCCTCCTCTGTACTTCACAACGGATGTAGCTTCCGGCCCGCCGGTGAGGTCTGAGTACAAAGGTTACAAGTTGGAGAATATTGTAGTGAGCAAAGAGGATGACATGGTGAAGAAAGAGAGGAAGAAGCCGTTTTTGTTCGACCTTAACCAGCCGGCTCCGCTCTTCTGA 489 0.5787 MPVHALPIPDHSPPSSKPKPKEAHFRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDTAARTLRGPKAKTNFAYVVSPPLHLPPAQAQDQLARPLEFWAPPLYFTTDVASGPPVRSEYKGYKLENIVVSKEDDMVKKERKKPFLFDLNQPAPLF* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g1009 162 Pfam AP2 domain 24 73 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 CDD AP2 23 83 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 SMART rav1_2 24 87 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 Gene3D AP2/ERF domain 23 83 IPR036955 GO:0003700|GO:0006355
Apr4g1009 162 PRINTS Ethylene responsive element binding protein signature 25 36 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 PRINTS Ethylene responsive element binding protein signature 47 63 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 102 - -
Apr4g1009 162 MobiDBLite consensus disorder prediction 1 28 - -
Apr4g1009 162 ProSiteProfiles AP2/ERF domain profile. 24 81 IPR001471 GO:0003700|GO:0006355
Apr4g1009 162 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 102 - -
Apr4g1009 162 SUPERFAMILY DNA-binding domain 24 82 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g1009 Apr-Chr4 8283313 8283962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g1009 21 80 AP2-EREBP Transcription Factor Family AT5G44210 88.333 2.24e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g1009 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g1009 K09286 - gmx:100816599 235.343