Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0998 ATGTGTGGGGGTGCTATTATCTCTGACTTCATTCCCGCGGCGGTGACGGCGAGGTCTCGACGCCTGACCGCGGATTACCTGTGGCCGGACTTGAAGAAGCCGAGCTCAGGGAAATCCCTGAGATCTGAGGTCATTGACTTGGATGATGAGTTTGAGGCTGATTTCAGGGAATTCAAGGACGATTCCGACATCGACGATGCCAAGCCCTTTACTTTCGCCGCCTCTTCTCGTCGATCTACGGCAGTGAAACCTGTGACATTCAAAGGGCAAGCTGAGAAATCTGCAAAGAGAAAGAGGAAGAATCAGTATAGGGGAATCCGTCAGCGTCCTTGGGGGAAATGGGCAGCTGAGATCAGGGATCCAAGAAAGGGGGTGCGTGTTTGGCTTGGAACCTTCAACACTGCTGAAGAAGCTGCTAGAGCTTATGATGCTGAAGCGCGGAGGATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCTGAGGAGTCTTCAGGTGCTTCCTTAAAACGTTCTAAGGTATATCGACAGGAAAATAGGAAAACTGTTCAGCCGTGCAATGTTGGTTATAGTGGCGAACCCTACTGTTGTCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAACCAGAATGCTGACGCGTACACCTTCCCTGGCAGTGTAAATGGGCTTGCATCCCTTGCTTCGTCTGATGATGTGACCCTTTACTTCAGTTCAGAGCAGGGGAGTAATTCATTTGATTATGCAGATCTTGGATGGGGTGAGCAGGGCCCCAAGACTCCTGAGATCTCATCCATGCTTTCTGCTCCCTTGGGTGGTGAATCCCATTTCGTGCAAGATGCCAACCACCAGAAAAATGTGCAGTCTGAATCTCAGGATGTAATACCTGTACAAGATCATTCTGCAAAAACCCTGTCTGAGGAGCTTGTGGATATTGAATCCGAGTTGAAGTTCTTTCAGATGCCTTATCTTGGAGAGAGTTGGGATGATACTTCATTGGAATCCTTGCTATCTGGAGACACAAGTCAGGATGGTGGAAATTTGATGAACCTTTGGAATTTTGATGACATTCCTTCCATGGCTGGTGGGGTTTTCTAA 1092 0.4844 MCGGAIISDFIPAAVTARSRRLTADYLWPDLKKPSSGKSLRSEVIDLDDEFEADFREFKDDSDIDDAKPFTFAASSRRSTAVKPVTFKGQAEKSAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPEESSGASLKRSKVYRQENRKTVQPCNVGYSGEPYCCPMDLVEQKPLVNQNADAYTFPGSVNGLASLASSDDVTLYFSSEQGSNSFDYADLGWGEQGPKTPEISSMLSAPLGGESHFVQDANHQKNVQSESQDVIPVQDHSAKTLSEELVDIESELKFFQMPYLGESWDDTSLESLLSGDTSQDGGNLMNLWNFDDIPSMAGGVF* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0998 363 CDD AP2 102 160 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 PRINTS Ethylene responsive element binding protein signature 103 114 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 PRINTS Ethylene responsive element binding protein signature 125 141 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 ProSiteProfiles AP2/ERF domain profile. 102 159 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 PANTHER DNA-BINDING DOMAIN 1 357 IPR044808 GO:0003700|GO:0009873
Apr4g0998 363 PANTHER EREBP TRANSCRIPTION FACTOR 1 357 - -
Apr4g0998 363 SUPERFAMILY DNA-binding domain 102 160 IPR016177 GO:0003677
Apr4g0998 363 SMART rav1_2 102 165 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 Pfam AP2 domain 102 151 IPR001471 GO:0003700|GO:0006355
Apr4g0998 363 Gene3D AP2/ERF domain 101 160 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0998 Apr-Chr4 8166954 8169157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0998 1 363 AP2-EREBP Transcription Factor Family AT1G53910 44.221 2.73e-72 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Apr4g0998 AP2 1.8e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0998 K09286 - gmx:100170723 494.967