Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0993 ATGGATTCCATGAACTCGTTCAATGGAAACGGCAAGGTGGATGAGGTGGAGCAACAAGCATTCAAGAAGAAGACACGCAAGCGTCTCATCATCCTCGCCGTCTCCTCCATAGTGCTCGTCGCCATCATCATTGCCGCCGTTGCAGGGACCGCCCAACAAACCTCTTCCTCCGCCGACAAATCCGCCCCGGCGTCCTCTCTGAGAGCGGTATGCAACGTAACACAGTACCCCAATTCCTGCTTCTCAAGCATCTCCTCACTCCCCAACACCAACACCATGGATCCTACTCACCTCTTCAACCTCTCCCTCCGCGTTGCGACCAATGCCCTCTCCAACCTCTCCCCTTACCTTTCCAACCTCCAACGCAACGCCAGCGATTCACGCCTGCAGAAGGCCATCCACGTCTGTGAAATGCTCCTCCAAGATGCCATCTCTCGCTTCAACGATTCAATCTCCTCCCTGGTTGGCGCCCAAGACCTCCTTCCTGCGACCAAGGTCAACGACATTCAGACTTGGCTCAGCGCAGCCATAACCGACCAAGACACTTGCTTAGATGCTCTGCAGGAGTTGAATTCAAGCGACGCTAACGCCATTCTTTATGATTTGAAAACTGACATGAAGAACTCCACGGAGTTCGCCAGCAACAGCTTGGCCATTGTCACTAAAATTCTGGGCCTGCTCTCCAACTTCAATGCCACAGTCCACCGGAGACTGCTCGGGGGTTTCCCGGAGTGGATGGACCGGAGGCTGCTGCAGGAAAGCCACGTGACGGCGGATGCGGTGGTGGCGAAGGACGGGAGCGGACAGTATTCGACGATAACTGAGGCGGTGGAGGCGGTGGAAAAGAGGAGCGAGAAGAGGTTCGTGATATATGTGAAGGAAGGGACTTATGAGGAGAACATTGATTTGGATGCGGATACTTGGAATGTCATGATTTACGGTGATGGCAAGAGTAAGACCATCATCTCCGGTAGCCGGAACTTTGTCGACGGCACCCCCACTTTTCAGACTGCCACTTTCGGTGTGAAGGGAAGGGGATTCATCGGGAAGGACATAGGATTTGTAAACAGTGCAGGTGCAGAGAAGCAACAGGGCGTGGCAATGCTATCTGCCTCGGATCGCTCAGTGTTCTACAGGTGTTCATTCGATGGTTTCCAGGATACTCTATATGCCCACTCGAACAGACAGTTCTACCGTGAGTGTGACATAACTGGAACCATTGACTTCATTTTCGGGAATGCAGCTGTTGTGCTACAGAACTGCAATATCATGCCAAGACAACCCTTAGCAAACCAGTTCAACACCATCACTGCTCAGGGCAAAACCGATCCCAACCAGAACACTGCCATTGTAATCCACAAGTCCTCAATCTCTGCGCTCCACGATCTTCAGTCTCCCACATACCTTGGTAGGCCTTGGAAAGATTACTCCACAACTGTTATTATGCACTCTGATATTGCCTCTTTCGTGAACCCCGCCGGCTGGACAAGCTGTTACCCCAACGAAGACCCTCCAAACACTATACTATATGCTGAATACCAAAATACTGGGCCGGGATCAGACACTTCACAGCGTGTTAAATGGCCCGGTTATAAGCCCGCTCTCACAGAAGAAGAGGCAGGGACATTCACCGTCCAATCCTTCATCCAAGGCCCTGAGTGGTTGCCGGACGCTGCTGTCCAGTTTGAGCCCACCTTGTAA 1701 0.5232 MDSMNSFNGNGKVDEVEQQAFKKKTRKRLIILAVSSIVLVAIIIAAVAGTAQQTSSSADKSAPASSLRAVCNVTQYPNSCFSSISSLPNTNTMDPTHLFNLSLRVATNALSNLSPYLSNLQRNASDSRLQKAIHVCEMLLQDAISRFNDSISSLVGAQDLLPATKVNDIQTWLSAAITDQDTCLDALQELNSSDANAILYDLKTDMKNSTEFASNSLAIVTKILGLLSNFNATVHRRLLGGFPEWMDRRLLQESHVTADAVVAKDGSGQYSTITEAVEAVEKRSEKRFVIYVKEGTYEENIDLDADTWNVMIYGDGKSKTIISGSRNFVDGTPTFQTATFGVKGRGFIGKDIGFVNSAGAEKQQGVAMLSASDRSVFYRCSFDGFQDTLYAHSNRQFYRECDITGTIDFIFGNAAVVLQNCNIMPRQPLANQFNTITAQGKTDPNQNTAIVIHKSSISALHDLQSPTYLGRPWKDYSTTVIMHSDIASFVNPAGWTSCYPNEDPPNTILYAEYQNTGPGSDTSQRVKWPGYKPALTEEEAGTFTVQSFIQGPEWLPDAAVQFEPTL* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0993 566 Pfam Pectinesterase 259 551 IPR000070 GO:0030599|GO:0042545
Apr4g0993 566 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 223 IPR006501 GO:0004857
Apr4g0993 566 SMART PMEI_2 62 219 IPR006501 GO:0004857
Apr4g0993 566 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Apr4g0993 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 64 224 IPR035513 -
Apr4g0993 566 SUPERFAMILY Pectin lyase-like 256 563 IPR011050 -
Apr4g0993 566 Gene3D - 253 566 IPR012334 -
Apr4g0993 566 Pfam Plant invertase/pectin methylesterase inhibitor 66 219 IPR006501 GO:0004857
Apr4g0993 566 PANTHER PECTINESTERASE 1-RELATED 18 563 - -
Apr4g0993 566 CDD PMEI-like_3 69 223 - -
Apr4g0993 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 67 224 IPR035513 -
Apr4g0993 566 PANTHER PECTINESTERASE 18 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0993 Apr-Chr4 8116031 8118503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0993 1 560 Carbohydrate Esterase AT1G53840 54.389 0.0 630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0993 - - gmx:100784642 744.962