Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0988 ATGGCAACAGACCACGAAGACGATATCAAGGATGAGAAGAATCCCCGCCCCCTGGACGAGGATGATATCGCCCTCCTCAAAACCTATGGTTTGGGACCTTATTCCACGAGCATAAAAAAAGTGGAGAAAGAAATTAAAGACATGGCAAAGAAAGTCAACGATTTATGTGGTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGTCAGTGGGATCTTGTTTCCGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGGTAGCAAGGTGCACAAAGATCATAAATCCAAACTCAGAAGATGCCAAATATGTTATCAATGTGAAGCAGATTGCGAAGTTTGTTGTTGGGCTGGGTGACAAAGTTTCACCCACAGACATAGAGGAAGGGATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCGTTGCCTCCAAAAATTGACCCAAGTGTTACAATGATGACAGTTGAAGAAAAGCCTGATGTGACATATAATGATGTTGGTGGTTGTAAGGAACAGATTGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTCCACCCAGAGAAATTTGTTAAGCTTGGAATCGATCCTCCAAAGGGTGTTCTTTGCTATGGTCCTCCGGGGACTGGCAAAACACTGTTAGCTAGGGCTGTGGCAAATAGAACTGATGCTTGTTTCATTAGGGTTATTGGAAGTGAGTTAGTTCAGAAATATGTCGGTGAGGGTGCTCGGATGGTTCGTGAACTGTTTCAGATGGCCCGTTCAAAGAAGGCATGCATTGTTTTTTTCGATGAAGTTGATGCAATTGGAGGTGCACGGTTTGATGATGGTGTTGGTGGTGATAACGAGGTTCAGCGCACTATGCTTGAAATTGTGAATCAGCTTGATGGATTTGATGCCCGTGGAAATATCAAAGTCTTGATGGCAACTAACAGGCCTGATACTCTAGATCCAGCACTACTACGGCCTGGACGATTGGACCGTAAAGTTGAATTTGGCCTTCCTGATTTAGAGAGTAGGACTCAGATATTCAAGATACACACAAGAACCATGAACTGTGAAAGGGATATCCGCTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCTACCGGAGCTGATATAAGGAGTGTATGCACTGAAGCTGGTATGTTTGCTATTCGAGCCCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAGTTAATAAAGTCATCAAAGGATACCAGAAATTCAGTGCTACTCCCAAGTATATGGTCTACAACTGA 1281 0.4364 MATDHEDDIKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKVEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMFAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0988 426 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 4 424 - -
Apr4g0988 426 Gene3D - 158 337 IPR027417 -
Apr4g0988 426 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Apr4g0988 426 Gene3D - 32 157 IPR012340 -
Apr4g0988 426 CDD AAA 171 338 - -
Apr4g0988 426 SMART AAA_5 201 340 IPR003593 -
Apr4g0988 426 PANTHER 26S PROTEASE REGULATORY SUBUNIT 7 HOMOLOG A 4 424 - -
Apr4g0988 426 TIGRFAM 26Sp45: 26S proteasome subunit P45 family 98 409 IPR005937 GO:0005737|GO:0030163|GO:0036402
Apr4g0988 426 Pfam AAA+ lid domain 360 403 IPR041569 -
Apr4g0988 426 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Apr4g0988 426 Gene3D - 339 420 - -
Apr4g0988 426 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 416 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0988 Apr-Chr4 8084642 8089005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0988 170 391 Calmodulin-binding Proteins AT3G56690 37.220 1.24e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0988 K03061 - gmx:100808239 851.662