Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0984 ATGATGAACAAAAACAACGTTGGACTGTTCGGGGATACAAGCATGACCAAAGTGTTTGTGGGAGGGTTAGCTTGGGAGACTCCAAAAGAGACACTGAGACAGCACTTTGAAAAGTTCGGTGAGATCCTTGAAGCCGTCATCATTTCCGATAAGCTCACCGGCAGATCCAAAGGCTACGGCTTTGTAACCTTCAAGGAAGCTGAGGCCGCGAAGAAGGCCTGCGAGGACCCAACTCTGATGATCAACGGCCGCAGAGCCAACTGCAATCTGGCATCTCTGGGTGCACGCCGTCCAAGGTCTTCACCTCCTACTCTTCCCCAGTCTCACACACAACAAGTCCTTGGAGGAACCATGAATGCCAATCCCGTCCACTGGTACTATCCCGCACCAACTCCTCCCCCTCCACCTCCACCTCCACCTCCACCTGCCTCTCCATTCCATCATCAACCTCTTCCCTTTTACGGGTACGCCCCCATGTACATTGCGGCGGACATAAATTACAATTACAATCAGAAGCTGAACTACGGAAGCGGTGGAGGCTACATGAACGGGCATGTGTACCCAATGTACCCTGTCTACCACCTCCACCGAACGGAGACAATGGGTGTTCCTGCCCACATCTTCCACCCATTTTCCCATCACTCCTAA 648 0.5247 MMNKNNVGLFGDTSMTKVFVGGLAWETPKETLRQHFEKFGEILEAVIISDKLTGRSKGYGFVTFKEAEAAKKACEDPTLMINGRRANCNLASLGARRPRSSPPTLPQSHTQQVLGGTMNANPVHWYYPAPTPPPPPPPPPPPASPFHHQPLPFYGYAPMYIAADINYNYNQKLNYGSGGGYMNGHVYPMYPVYHLHRTETMGVPAHIFHPFSHHS* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0984 215 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Apr4g0984 215 SMART rrm1_1 17 89 IPR000504 GO:0003723
Apr4g0984 215 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 75 IPR000504 GO:0003723
Apr4g0984 215 Gene3D - 11 97 IPR012677 -
Apr4g0984 215 PANTHER GEO13361P1-RELATED 2 211 - -
Apr4g0984 215 SUPERFAMILY RNA-binding domain, RBD 14 103 IPR035979 GO:0003676
Apr4g0984 215 CDD RRM_RBM24_RBM38_like 16 91 - -
Apr4g0984 215 PANTHER RNA-BINDING PROTEIN ARP1-RELATED 2 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0984 Apr-Chr4 8053147 8054167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0984 12 92 C2H2 Transcription Factor Family AT2G19380 44.444 2.19e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0984 - - lang:109337745 268.47