Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0979 ATGGAGTTGATGCAAGAAGTTAAAGGTAATTATTCGGATAGCAGGGAAGAAGAGGAGGAAGAGGAAGCAGCAGAGATCATCACAATCGCAAGAGAAGCAGAAAGCAGCAGGTTACACCACCAAGATGCAGCAGCAGCATCCAATTTCAGAAAGCAGCTAGACTTGATGGACCTGTCGCTGGGGAGCAACAAGGAAGAGGAAGAAGAAGAAGCCAATCTGCAACAAGGAGCAGGAGGAGGAGTTGCCCATCATCATCAACAGCATCAACATCATCATCATCATCATAACGCACATGCCCATGCCACTTGTTCATCCTCGAACGCAAAAGAGGTGGTGGAGAAAGAGCACATGTTTGACAAAGTGGTGACACCGAGCGATGTAGGGAAGCTGAACAGGCTGGTGATACCAAAGCAGCATGCAGAGAAGTACTTCCCCCTCGACTCCTCCTCAAACGAGAAGGGGTTACTCCTCAATTTCGAAGACCGAAACGGAAAGGTGTGGCGGTTCAGGTATTCCTATTGGAACAGCAGCCAGAGCTATGTGATGACAAAGGGGTGGAGCCGTTTTGTGAAGGAGAAGAAGCTCGACGCCGGTGACATCGTCTCCTTCCAACGCGGCCTCGGAGATTTGTATAGACATAGGTTGTACATAGACTGGAGGCGAAGACCTGATCATGCCTCTGACCCTTCACACTCCCCTTTGTTTCTTCCCTCTATCAGATGGGGTCCTAGATTCTACTCTCTCCCTTCTCAGCCCCCTATCATTCCACCTCGCTACCATGATCATTTCCACCACCTCAATTACAACAACACCTTCACTTTTCAGCAGCAGCAGCAGCAGCACCAGCACCAGCACTACCTTGGTGCTTCTCATCACAACCACTATGGTGAGCTCAATTCGGGATCTGGGTCGCTCTATTACCTGAGGTCCTCCATGTCAACGGGCGCTGATCAAAACTTGCCTGAGAGAGGGAACAACATTGTCCCCATGATCATTGATTCTGTTCCCGTTGCTCATCACCATCACCATGGCCATGGGGGCATCATGAGTGGCGCTGCTACTGCTAGTGGTAATAGTAATACTCCAACTGGTGGAAAACGGCTGAGGTTATTTGGGGTGAACATGGAATGTGCTTCTTCGGCAGATGATTCAAAAGGCTTGTCCTCGGCTTCGGCATCACATGTGGCAGTGCCTAATTCATCACTTCCCTCTTCTTCTCTTCAGCGCTTGAGGGTGTCCCATGAAGACCCACTTTCTTCTTCGGCCAGGTTTGGGGATCAGAGAGGCGGTACTAATTCCATGTTTGATTTGGATCCATCTTTGCAATATCGGCAGTGA 1338 0.497 MELMQEVKGNYSDSREEEEEEEAAEIITIAREAESSRLHHQDAAAASNFRKQLDLMDLSLGSNKEEEEEEANLQQGAGGGVAHHHQQHQHHHHHHNAHAHATCSSSNAKEVVEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKVWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGLGDLYRHRLYIDWRRRPDHASDPSHSPLFLPSIRWGPRFYSLPSQPPIIPPRYHDHFHHLNYNNTFTFQQQQQQHQHQHYLGASHHNHYGELNSGSGSLYYLRSSMSTGADQNLPERGNNIVPMIIDSVPVAHHHHHGHGGIMSGAATASGNSNTPTGGKRLRLFGVNMECASSADDSKGLSSASASHVAVPNSSLPSSSLQRLRVSHEDPLSSSARFGDQRGGTNSMFDLDPSLQYRQ* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0979 445 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR NGA2 71 400 - -
Apr4g0979 445 Gene3D - 111 232 IPR015300 -
Apr4g0979 445 Coils Coil 4 24 - -
Apr4g0979 445 MobiDBLite consensus disorder prediction 1 23 - -
Apr4g0979 445 MobiDBLite consensus disorder prediction 395 445 - -
Apr4g0979 445 MobiDBLite consensus disorder prediction 424 445 - -
Apr4g0979 445 MobiDBLite consensus disorder prediction 339 367 - -
Apr4g0979 445 SMART B3_2 118 223 IPR003340 GO:0003677
Apr4g0979 445 MobiDBLite consensus disorder prediction 84 99 - -
Apr4g0979 445 SUPERFAMILY DNA-binding pseudobarrel domain 115 208 IPR015300 -
Apr4g0979 445 MobiDBLite consensus disorder prediction 395 415 - -
Apr4g0979 445 CDD B3_DNA 116 205 IPR003340 GO:0003677
Apr4g0979 445 ProSiteProfiles B3 DNA-binding domain profile. 118 223 IPR003340 GO:0003677
Apr4g0979 445 MobiDBLite consensus disorder prediction 63 107 - -
Apr4g0979 445 Pfam B3 DNA binding domain 118 222 IPR003340 GO:0003677
Apr4g0979 445 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 71 400 IPR044800 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0979 Apr-Chr4 8002019 8004625 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0979 99 381 RAV Transcription Factor Family AT2G46870 52.613 1.99e-81 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Apr4g0979 B3 4e-29 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0979 - - vun:114162133 560.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0979 4 8002019 8004625 Apr4g0979 4 8002019 8004625 ECH