Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0978 ATGGAGGACGGGAATAGGGTTCCGGCGGGGGATGAGGCAGTGGGTTCTTACTGGCTGGATGCGTGTGAGGACATATCCTGCGATTTCATGGATTTTGATGTCTCATCCATCGTCTCAGAGCAACCTGACAACACTTCCAATCAGGACTTCTTCGGTGGCATTGATAAAATATTGGACAGCATCAAGAACGGTGCTGGTCTCCCTCCTCATGTTGAACCCAATTCCAATTCCAATGTTGTTGCAGGAGCAGAAGCTTGTTTGCTTAATGATCCCTCCAATGCCACTCTCCACAAGAATGGATTGGTTGGGGAGAAACATCCTCGTACTGCTGATGCTTTTGACCATTCTGGACCTCAGAGTAATGGCTCTAGTAAGATGTCAAATGGGAGTGAAGGGGGAGTTTCGGCTAATCACTCTCAGGAAAGTGGAGGTGTGCTTCTCAATGGACTTGACGGTGAAGAGAGATGCGGCAAAAGGGCTCGCCTTGGCAGCTACAGGAATGACAGGCCTTGTTATGGTAGACCGAATTATCAAGCCAAGGAGAGGGAGAGGTGTTTGAATAACAGGAAGAGGCCGCGGGATAGGGATGAGATTGATAGGAGGGATAAGGATGCCGTGAGGAAAAGAGAGCATTATGGTAATTGTGGCAGGAGGGATGTTAGAGATAGGGATTGGAGGGATAGAGAACCCAGGGGTTACTGGGAGAGGGATAAGTCAGGTTCTAATGACATGGTCTTTCGCTTGGGCACTTGGGAACCTGATCGTAATCGAGAAGAGAAAATGGCAAATGATGCCAAACAGGAAACTAATGGAAAGCTTGATAAGAAATCTGAGGAGGCTAAGGAGAGGGCTCCTGAGGAGAAAGCTAGACAGTATCAGTTGGATGTTCTGGAGCAGGCAAAGAAGAAAAATACTATAGCTTTTCTTGAAACTGGAGCAGGGAAAACCTTAATTGCTGTTCTTCTCATTAAAAGTATACAGGAGACTTTGCAAAAGCAAAATAAGAAGATGCTCGCTGTATTTTTAGTTCCAAAAGTTCCACTTGTTTACCAGCAAGCTGAAGTAATTCGTGAGCGGACTGGTTATCAAGTGGGCCACTATTGTGGAGAAATGGGGCAGGATTTCTGGGATGCTCGAAGGTGGCAGCGTGAATTTGACACCAAACATGTTTTAGTCATGACTGCTCAAATTCTTTTGAACATTTTGAGGCATAGCATAATAAAAATGGAATCAATCAATCTCTTAATTTTGGATGAGTGCCACCATGCTGTGAAGAAGCACCCATATTCACTGGTGATGTCTGAGTTCTACCATACAACATCCAAAGAGAAGAGGCCATCTGTATTTGGAATGACTGCCTCTCCTGTTAACTTGAAGGGTGTCTCCAGCCAAGTAGATTGTGCAATAAAAATTCGTAATCTTGAAAGTAAGCTAGATTCAATAGTTTGCACTATTAAAGATCGTAAGGAGTTGGAGAAACATGTGCCAATGCCCTCTGAAGTTGTGGTGGAGTATGATAAAGCTGCCAGTTTATGTTATCTACATGAGCAGATAAGGCAGATGGAGGTTGAAGTTGAAGAAGCTGCAAAATCTAGCTCAAGAAGAAGCAAATGGCAGTTCATGGGAGCTAGAGATGCCGGAGCTAAGGAAGAGCTGCGCCAAGTATATGGTGTTTCAGAAAGAACAGAAAGTGATGGAGCTGCAAACCTAATTCAAAAGTTGAGAGCTGTTAATTATGCACTTGGCGAACTGGGACAATGGTGTGCATACAAGGTTGCACAGTCCTTTCTAGCTGCCTTGCAAAATGATGAAAGGGCAAACTACCAACTTGATGTCAAGTTTCAGGAATCTTATCTAAGTAAAGTTGTCTCTCTTCTGAAATGTCAACTGTCAGAAGGTGCAGTTTCTGACAAAAATGATGGAATTGATGACTCAGAGACTGGTGCAGCTAAAAGTGGGTCTGAACATGAAGAGATTGAAGAAGGAGAGCTTCCAGATAGTCACGTTGTCTCCGGTGGGGAGCATGTGGATGTCATTATAGGAGCTGCTGTGGCTGATGGCAAGGTGACCCCCAAGGTGCAGGCACTAATCAAAATACTTCTCAAGTACCAGCATACAGAAGACTTCCGTGCAATCATCTTTGTTGAGCGTGTTGTGTCTGCATTAGTTCTACCCAAGGTCTTTGCAGAGCTTCCATCTCTTAGTTTTGTGAAATGTGCAAGCTTGATTGGCCACAACAATAGTCAGGAAATGCGGACCTACCAAATGCAGGATACAATTGCCAAGTTCCGTGATGGGCGGGTCACGTTGTTAGTGGCCACTAGTGTAGCTGAAGAAGGACTTGATATTCGGCAATGCAATGTTGTTATTCGCTTTGACCTGGCGAAGACTGTTCTGGCATACATTCAATCTAGGGGCCGTGCTAGAAAGCCTGGGTCTGATTACATCCTTATGGTTGAGAGGGGAAATTTGTCACATGAAGCATTCCTACGGAATGCCAGGAACAGTGAGGAGACTTTGCGCAAAGAAGCAATAGAGAGAACAGACCTAAGTCATCTGAAAGACACTTCAAGATTAATTTCTGTAGACACCCGGCCTGGAACAGTGTACCAGGTCAAATCAACTGGTGCAGTTGTGAGCTTAAATTCTGCCGTAGGTCTTATCCACTTCTACTGCTCTCAGCTACCCAGTGACAGATATTCAATTCTTCGTCCTGAGTTTATTATGGAGAGGCACGAAAAACCAGGAGGTCCCACTGAGTATTCTTGCAAGCTTCAACTGCCGTGTAATGCACCATTTGAAAATCTTGAGGGTCCTATATGCAGTTCAATGCGCCTGGCCCAACAGGCTGTTTGTCTGGCTGCTTGCAAGAAACTGCATGAGATGGGAGCATTCACTGACATGCTATTGCCGGATAAAGGAAGTGGGGGAGAAAGAGAAAAGGCTGAGCAAAATGATGAAGGAGATCCACTTCCAGGGACTGCTAGACATAGGGAATTCTATCCTGAAGGTGTGGCTGACATACTGAAGGGAGAATGGGTCTTATCTGGAAAAGATGCTTGCAACAACTCCAAATTGCTTCATCTTTATATGTATGCTGTGAAGTGCGAAAATGTAGGCCATTCAAAGGATCCGTTCTTGACTCAAGTTTCAGATTTTGCAGTTCTTTTTGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCAATGGATCTATTTATCGCTCGAACCGTGACTACAAAGGCATCTCTTGTCTTTAGAGGGTCAATAGATATTTCTGAGAGTCAGCTGGCATCCTTGAAAAGCTTTCATGTTAGATTAATGAGCATTGTCTTGGATGTGGATGTTGAACCATGTACCACTCCTTGGGATCCTGCAAAAGCATATTTGTTTGTCCCAATGGTTTGCGATAAGTCTGTAGATCCTATGAACCAAGTTGATTGGCATCTGGTTGAGACAATAATTGGAGCAGATGCATGGAAGAATCCCCTCCAGAGAGCTCGACCAGATGTTTACCTTGGTACTAATGAGAGAACATTAGGTGGAGACAGAAGGGAATATGGATTTGGGAAGTTGCGTCATGGCATGGCTTTTGGACAAAAATCACATCCAACCTATGGAATCAGAGGAGCTGTGGCCCAGTTTGATGTGGTGAAAGCTTCAGGATTGGTTCCTAACAGAGATTCCATGCAAACACAAAAGCACATCAATATGACTATCAAAGGGAGATTGATGATGGCAGATACCTGTACTAATGCTGAGGATCTGTTAGGGAAAATCGTAACTGCTGCTCATTCAGGGAAGAGGTTTTATGTTGATTCAATACGCTATGATATGTCAGCGGAGAACTCTTTCCCTAGGAAAGAAGGTTATCTTGGTCCTCTAGAGTACAGTTCATATGCTGATTACTACAAGCAAAAGTATGGGGTTGATTTGATATACAAGCAACAACCTCTTATAAGAGGGCGTGGTGTCTCATACTGTAAGAATCTTCTGTCCCCCCGATTTGAGCACAGTGAAGGACACGAAGGTGAATCTGAAGAGACTCATGACAAAACTTATTATGTTTTCCTTCCTCCTGAGCTATGCCTAGTTCACCCTCTGCCTGGATCACTTGTCCGTGGTGCCCAGAGGTTGCCTTCAATAATGAGGAGGGTTGAAAGCATGCTACTTGCTATTCAGCTAAAGAATATGATAAATTATCCTGTCCAGGCTTTAAAGATCTTGGAAGCCTTGACCGCTGCCTCTTGCCAGGAGACATTCTGCTATGAGAGGGCAGAGCTTCTTGGAGATGCTTACCTGAAATGGGTTGTTAGTCGATTTCTTTTCCTAAAATACCCACAGAAACATGAAGGACAACTTACTAGGATGAGGCAACAAATGGTCAGTAACATGGTATTGTATCAGTATGCATTAAGTAAAGGACTTCAATCATATATTCAAGCAGATCGCTTTGCCCCATCCAGATGGGCAGCTCCTGGGGTGCTTCCTGTCTTTGATGAGGATATCAAGGATGGGGATTCATCTTTGTTTGACCAGGAGAGATCCATTTCTAAGACTGAGAGTATGGATTGTCGGACTGATGAATATGAGGATGAGATGGAAGATGGTGAACTTGAGAGTGATTCAAGTTCTTACAGAGTTTTGTCCAGTAAGACACTTGCAGATGTTGTGGAAGCACTCATTGGGGTATATTATGTTGAAGGTGGTAAGAGTGCTGCTAACCACCTTATGAAATGGATTGGAATTCAAATAGAGTTTGATCCTGATGAGATGGAGTGTACAAGAAAGCCGTTTAATGTTCCAGACAGCATACTTAGGAGTGTTGATTTTGATGCTTTAGAAGGTGCTTTAAATCTGAACTTTAAAGACAGGGGGCTGCTGGTAGAATCCATAACTCATGCCTCCAGACCATCTTCTGGAGTATCCTGTTATCAACGGTTGGAGTTTGTTGGTGATGCTGTCTTGGATCATCTTATTACAAGGCACTTGTTTTTCACTTACACTAATCTGCCACCAGGACGTCTGACTGATCTTCGGGCTGCTGCTGTAAATAATGAAAATTTTGCACGTGTTGCAGTTAAACATAACCTTCATGTGCATCTCCGACATGGTTCCAGTGCCCTAGAAAAACAGATTAAAGAATTTGTGAAGGAAGTGCAAGATGAATTGTCAAAGCCAGGGTTTAACTCCTTTGGTCTGGGAGACTGCAAAGCTCCCAAGGTCCTTGGTGACATTGTTGAATCTATTGCAGGTGCTATTTTTCTTGACAGTGGGAGGGATACTACTATTGTTTGGAAGGTTTTTCAGCCTCTTTTGCATCCTATGGTTACCCCGGAGACTCTGCCAATGCATCCTGTGCGTGAGCTGCAAGAGCGATGTCAGCAGCAAGCCGAAGGCTTAGAGTATAAAGCAAGTCGTATTGGCAATTTGGCCACTGTTGAAGTGTTCATTGACGGGGTACAAGTAGGGGCTGCTCAAAATCCACAGAAAAAAATGGCACAGAAATTAGCTGCAAGAAATGCCCTTGCTGCTTTGAAAGAGAAGGAAGTGGGAAAAACTCAGGAGAAGAATGATGAAAATGGGAAAAAGAATGGAAATCAGACATTTACTAGACAGACGTTAAATGATATCTGTTTACGAAGAAATTGGCCTATGCCATTCTATAGGTGTGTAAATGAGGGTGGTCCAGCACACGCAAAGAGGTTTACATTTGCGGTACGCGTCAATACTACTGATAGAGGATGGACAGATGAATGTGTTGGAGAGCCAATGCCAAGTGTCAAAAAGGCCAAAGACTCGGCTGCTGTTCTTCTCTTAGAACTACTAAACAAATTATACTCGTGA 5847 0.4387 MEDGNRVPAGDEAVGSYWLDACEDISCDFMDFDVSSIVSEQPDNTSNQDFFGGIDKILDSIKNGAGLPPHVEPNSNSNVVAGAEACLLNDPSNATLHKNGLVGEKHPRTADAFDHSGPQSNGSSKMSNGSEGGVSANHSQESGGVLLNGLDGEERCGKRARLGSYRNDRPCYGRPNYQAKERERCLNNRKRPRDRDEIDRRDKDAVRKREHYGNCGRRDVRDRDWRDREPRGYWERDKSGSNDMVFRLGTWEPDRNREEKMANDAKQETNGKLDKKSEEAKERAPEEKARQYQLDVLEQAKKKNTIAFLETGAGKTLIAVLLIKSIQETLQKQNKKMLAVFLVPKVPLVYQQAEVIRERTGYQVGHYCGEMGQDFWDARRWQREFDTKHVLVMTAQILLNILRHSIIKMESINLLILDECHHAVKKHPYSLVMSEFYHTTSKEKRPSVFGMTASPVNLKGVSSQVDCAIKIRNLESKLDSIVCTIKDRKELEKHVPMPSEVVVEYDKAASLCYLHEQIRQMEVEVEEAAKSSSRRSKWQFMGARDAGAKEELRQVYGVSERTESDGAANLIQKLRAVNYALGELGQWCAYKVAQSFLAALQNDERANYQLDVKFQESYLSKVVSLLKCQLSEGAVSDKNDGIDDSETGAAKSGSEHEEIEEGELPDSHVVSGGEHVDVIIGAAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVSALVLPKVFAELPSLSFVKCASLIGHNNSQEMRTYQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQSRGRARKPGSDYILMVERGNLSHEAFLRNARNSEETLRKEAIERTDLSHLKDTSRLISVDTRPGTVYQVKSTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFENLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGGEREKAEQNDEGDPLPGTARHREFYPEGVADILKGEWVLSGKDACNNSKLLHLYMYAVKCENVGHSKDPFLTQVSDFAVLFGNELDAEVLSMSMDLFIARTVTTKASLVFRGSIDISESQLASLKSFHVRLMSIVLDVDVEPCTTPWDPAKAYLFVPMVCDKSVDPMNQVDWHLVETIIGADAWKNPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAFGQKSHPTYGIRGAVAQFDVVKASGLVPNRDSMQTQKHINMTIKGRLMMADTCTNAEDLLGKIVTAAHSGKRFYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEGESEETHDKTYYVFLPPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAIQLKNMINYPVQALKILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDIKDGDSSLFDQERSISKTESMDCRTDEYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKSAANHLMKWIGIQIEFDPDEMECTRKPFNVPDSILRSVDFDALEGALNLNFKDRGLLVESITHASRPSSGVSCYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHLRHGSSALEKQIKEFVKEVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSGRDTTIVWKVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKASRIGNLATVEVFIDGVQVGAAQNPQKKMAQKLAARNALAALKEKEVGKTQEKNDENGKKNGNQTFTRQTLNDICLRRNWPMPFYRCVNEGGPAHAKRFTFAVRVNTTDRGWTDECVGEPMPSVKKAKDSAAVLLLELLNKLYS* 1949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0978 1948 CDD RIBOc 1627 1782 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 Pfam Ribonuclease III domain 1646 1759 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 Pfam Ribonuclease III domain 1424 1570 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 MobiDBLite consensus disorder prediction 245 288 - -
Apr4g0978 1948 ProSitePatterns Ribonuclease III family signature. 1646 1654 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 SUPERFAMILY RNase III domain-like 1610 1780 IPR036389 GO:0004525|GO:0006396
Apr4g0978 1948 MobiDBLite consensus disorder prediction 114 144 - -
Apr4g0978 1948 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 1870 1943 - -
Apr4g0978 1948 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1870 1945 IPR014720 -
Apr4g0978 1948 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 696 856 IPR001650 -
Apr4g0978 1948 SUPERFAMILY PAZ domain 1243 1367 IPR036085 GO:0005515
Apr4g0978 1948 SUPERFAMILY RNase III domain-like 1383 1588 IPR036389 GO:0004525|GO:0006396
Apr4g0978 1948 SMART DRBM_3 1871 1944 IPR014720 -
Apr4g0978 1948 SMART DRBM_3 1786 1847 IPR014720 -
Apr4g0978 1948 ProSiteProfiles PAZ domain profile. 1253 1367 IPR003100 GO:0005515
Apr4g0978 1948 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 823 IPR027417 -
Apr4g0978 1948 PANTHER ENDORIBONUCLEASE DICER HOMOLOG 1 244 1946 - -
Apr4g0978 1948 Pfam DEAD/DEAH box helicase 292 454 IPR011545 GO:0003676|GO:0005524
Apr4g0978 1948 MobiDBLite consensus disorder prediction 637 667 - -
Apr4g0978 1948 Gene3D - 1783 1861 - -
Apr4g0978 1948 SUPERFAMILY dsRNA-binding domain-like 1874 1944 - -
Apr4g0978 1948 CDD DEXHc_dicer 288 487 - -
Apr4g0978 1948 Gene3D - 682 848 IPR027417 -
Apr4g0978 1948 SMART PAZ_2_a_3 1231 1391 IPR003100 GO:0005515
Apr4g0978 1948 Gene3D - 1876 1946 - -
Apr4g0978 1948 Gene3D Ribonuclease III domain 1607 1780 IPR036389 GO:0004525|GO:0006396
Apr4g0978 1948 Gene3D Ribonuclease III domain 1390 1584 IPR036389 GO:0004525|GO:0006396
Apr4g0978 1948 MobiDBLite consensus disorder prediction 1849 1863 - -
Apr4g0978 1948 CDD DSRM_DCL_plant 1876 1937 - -
Apr4g0978 1948 SMART riboneu5 1626 1782 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 SMART riboneu5 1406 1590 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 SMART helicmild6 725 811 IPR001650 -
Apr4g0978 1948 MobiDBLite consensus disorder prediction 1849 1869 - -
Apr4g0978 1948 Coils Coil 263 283 - -
Apr4g0978 1948 Gene3D Dicer dimerisation domain 879 980 IPR038248 -
Apr4g0978 1948 MobiDBLite consensus disorder prediction 970 996 - -
Apr4g0978 1948 CDD RIBOc 1408 1588 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 MobiDBLite consensus disorder prediction 106 151 - -
Apr4g0978 1948 MobiDBLite consensus disorder prediction 250 288 - -
Apr4g0978 1948 PANTHER DICER-RELATED 244 1946 - -
Apr4g0978 1948 Gene3D paz domain 1246 1365 - -
Apr4g0978 1948 Pfam Dicer dimerisation domain 884 972 - -
Apr4g0978 1948 Gene3D - 284 527 IPR027417 -
Apr4g0978 1948 ProSiteProfiles Ribonuclease III family domain profile. 1611 1759 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 Pfam PAZ domain 1249 1387 IPR003100 GO:0005515
Apr4g0978 1948 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 296 473 IPR014001 -
Apr4g0978 1948 Pfam Helicase conserved C-terminal domain 692 809 IPR001650 -
Apr4g0978 1948 MobiDBLite consensus disorder prediction 182 211 - -
Apr4g0978 1948 CDD SF2_C_dicer 689 819 - -
Apr4g0978 1948 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 1785 1848 IPR014720 -
Apr4g0978 1948 MobiDBLite consensus disorder prediction 973 996 - -
Apr4g0978 1948 ProSiteProfiles Ribonuclease III family domain profile. 1410 1570 IPR000999 GO:0004525|GO:0006396
Apr4g0978 1948 ProSiteProfiles Dicer double-stranded RNA-binding fold domain profile. 884 979 IPR005034 GO:0016891
Apr4g0978 1948 SMART ultradead3 285 488 IPR014001 -
Apr4g0978 1948 SUPERFAMILY dsRNA-binding domain-like 1741 1867 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0978 Apr-Chr4 7969259 7981160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0978 708 851 Eukaryotic Initiation Factors Gene Family AT5G11200 29.252 1.73e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0978 K11592 - gmx:100811631 3474.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0978 4 7969259 7981160 Apr4g0978 4 7969259 7981160 ECH