Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0972 ATGGATCCTTCGTTAGAATCCAATGCAAAACTTGGCAACGAGAAAAGCGAGGATCTAAAACCAGTTGGAGAGGAAGATGTTGACGCCCTGTGGTTTTGCATGGAAAAGATGGCTACTTTGGTGCTTCCAATGGCTTTGCGGTCGGCGTTACAGCTTGGCATCTTTGACATCCTAGCCAAAGCCGGCGAAGGTGCAGAGCTTTCTGCAAACGACATCGCCGTTGAGATTGGCACCAACAACCCAAAAGCTCCCTCCATGGTGGATCGTATTCTTAGTCTTTTGGTTACTCACTCTCTGCTATGTTGTTCTGTTTCTAATCCTCAACCTCAGAGTGAGAGACTCTACAGCCTCTCTCGTGTCTCCAAATATTTTGTTACTGATTCTGACGGTATATCATTGGGATTCACGTTGACGTTGGTTGTGGACGAGGTCTGCTACAAAAGCTGGGGAGAACTGACAGGAGCAATCGTAGAAGGGGGTGTAGCGTTCGACAGGGCTCATGGCATGAATGCCTTTGAGTATCCAAGTGTGGATCCAAGGTTTAATGAGGTTTTCAACAAAGCTATGATCGGCAACACCACTCTAACAACCAAGAAGATTCTTGAATTGTATAAAGGTTTTGAGCACGTGACTAAGCTGGTGGACGTTGGTGGAGGTCTTGGGATCAATCTCAAATTGATCACATCCAAATACCCTCATATTCAGGGTATTAATTTTGACTTGCCTCATGTTTTACAACATGCCCCACTCTATGCTGGTGTGGAGCATGTGGGTGGAGATATGTTTCAGAGCGTTCCTTCAGCAGATGCTATTTTTATGAAGTGGATACTTCATGATTGGAGTGATGAACAGTGCTTGAAGCTCTTGAAGAATTGCTACAAAGCTATTCCTGATGACGGAATGGTTATTGTGGTGGAAACGGTTCTGCCCCTTGTTCCTGAGACAACAGTTGCTTCCAGATGTGCTTTCACATCTGACCTCATGATGATGACTCAAAATCCAGGAGGGAAAGAGCGAACCCACCTTCAATTCACCCAATTCGCTCAAGAATCTGGATTTAGTGGTGTCAGATTCGTGTGCTGTGTCTGTGGCTTATGGATTATGGAGTTCTACAAGTAG 1119 0.4531 MDPSLESNAKLGNEKSEDLKPVGEEDVDALWFCMEKMATLVLPMALRSALQLGIFDILAKAGEGAELSANDIAVEIGTNNPKAPSMVDRILSLLVTHSLLCCSVSNPQPQSERLYSLSRVSKYFVTDSDGISLGFTLTLVVDEVCYKSWGELTGAIVEGGVAFDRAHGMNAFEYPSVDPRFNEVFNKAMIGNTTLTTKKILELYKGFEHVTKLVDVGGGLGINLKLITSKYPHIQGINFDLPHVLQHAPLYAGVEHVGGDMFQSVPSADAIFMKWILHDWSDEQCLKLLKNCYKAIPDDGMVIVVETVLPLVPETTVASRCAFTSDLMMMTQNPGGKERTHLQFTQFAQESGFSGVRFVCCVCGLWIMEFYK* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0972 372 Pfam O-methyltransferase domain 149 354 IPR001077 GO:0008171
Apr4g0972 372 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 34 372 IPR016461 GO:0008168
Apr4g0972 372 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 1 372 - -
Apr4g0972 372 Gene3D Vaccinia Virus protein VP39 125 372 IPR029063 -
Apr4g0972 372 Gene3D - 11 124 IPR036388 -
Apr4g0972 372 SUPERFAMILY "Winged helix" DNA-binding domain 24 127 IPR036390 -
Apr4g0972 372 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 131 371 IPR029063 -
Apr4g0972 372 Pfam Dimerisation domain 44 95 IPR012967 GO:0046983
Apr4g0972 372 PANTHER O-METHYLTRANSFERASE 1 372 IPR016461 GO:0008168
Apr4g0972 372 PIRSF O-mtase 12 372 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0972 Apr-Chr4 7918745 7920026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0972 11 372 Monolignol Biosynthesis Gene Families AT5G54160 49.311 2.22e-130 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0972 K13066 - gmx:100789402 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0972 4 7918745 7920026 Apr4g0972 4 7918745 7920026 ECH