Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0969 ATGGCGGGGAGGAACAGTAATCGTGACAATAGCGTTGCTCTGATGGATCTTTTGCTTGCTGTAATGTTCTTTGGTGAGCATTTGGAAGTGAATTGTTTGGAGCAAGGCTTGAGGTTGAAACTTGAGGAGGATGAAGAATTTGTGGTGTCAAGCTTAGAGGATAACATGCCATTCCTACAGATGCTTCAGAGTGTAGAATCCCCACAATTTATCCCCTTCGAAGAACCAAGCTTTCAGACACTCTTGAGACTGAAGAAACCATGGGAAAAAGTAGCTTACATACCCATATCGGAGACTCAAAGTCAAGCCATGGAGATTGAGAGCTGCGTCACACATGACCTGGTGGAGATGCAGTCACCACACCAGTCCCAAACCAACCACCTTCAACATCCGCATCAAGTTCAAGATAGTAACAAGAATGTTATTGCAGATTCTGCAGCTACAATCAAACGTCCCAAAACTCAGGTTGCTACACGGGAACGTAGAAAGAGAAAGAGAACGAGACAAACGAAGAACAAGGAAGATGTTGAGAACCAGCGTATGACTCACATTGCAGTGGAACGCAACAGGCGACGCCAAATGAATGAGCATCTCAGTGTTCTAAAATCCCTCATGCCCCCTTCCTATATTCAAAGGGGTGACCATGCATCAATCATTGGAGGTGCAATAGACTTTGTGAAGGAATTGGAGCAGTTACTTCAATCCCTGGAAGCACATAAAAGGATGAGAAAGAACGAATATGTTGATTGTAGGGGGTTGTTTGAGCATGGCTATGGAATGAGTTCATCCACGGAAGAAGTGAAGCGTGGAGATGAGGTTAAGGCAGAACAGAAATCAGAGACAACAGCTATAGAGGTCACTGTGATTCAAACGCATGTGAACCTGAAAATTCAGTGCCAGAAAAGAGTTGGGCAATTGATAAAAGCTATTGGAGGCTTGGAGGATCTTAGGCTAACTATTTTGCATCTAAACATCGCATCCTCAGAGGCTACAGTCATCTACTCTTTCAATCTCAAGATTGAAGAAGACAGTAAAATAGTGTCAGCAAGTGAAATTGCAGAAGCAGTTAATCGAATATTTAGCTCCATTAATAACAGCTAA 1101 0.4314 MAGRNSNRDNSVALMDLLLAVMFFGEHLEVNCLEQGLRLKLEEDEEFVVSSLEDNMPFLQMLQSVESPQFIPFEEPSFQTLLRLKKPWEKVAYIPISETQSQAMEIESCVTHDLVEMQSPHQSQTNHLQHPHQVQDSNKNVIADSAATIKRPKTQVATRERRKRKRTRQTKNKEDVENQRMTHIAVERNRRRQMNEHLSVLKSLMPPSYIQRGDHASIIGGAIDFVKELEQLLQSLEAHKRMRKNEYVDCRGLFEHGYGMSSSTEEVKRGDEVKAEQKSETTAIEVTVIQTHVNLKIQCQKRVGQLIKAIGGLEDLRLTILHLNIASSEATVIYSFNLKIEEDSKIVSASEIAEAVNRIFSSINNS* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0969 366 CDD bHLH_AtFAMA_like 181 244 - -
Apr4g0969 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 178 229 IPR011598 GO:0046983
Apr4g0969 366 MobiDBLite consensus disorder prediction 150 177 - -
Apr4g0969 366 Coils Coil 226 246 - -
Apr4g0969 366 PANTHER TRANSCRIPTION FACTOR BHLH70 34 365 - -
Apr4g0969 366 Gene3D - 169 246 IPR036638 GO:0046983
Apr4g0969 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 178 248 IPR036638 GO:0046983
Apr4g0969 366 SMART finulus 184 235 IPR011598 GO:0046983
Apr4g0969 366 PANTHER MAX DIMERIZATION, MAD 34 365 - -
Apr4g0969 366 Pfam Helix-loop-helix DNA-binding domain 179 230 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0969 Apr-Chr4 7903638 7906704 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0969 50 365 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G01460 44.510 1.62e-70 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0969 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0969 - - aprc:113862094 705.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0969 4 7903638 7906704 Apr4g0969 4 7903638 7906704 ECH