Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0966 ATGGCGGCTAATGCTACTTTATCTCTGGCCTTAACTCCTTTCTCGTTACTGAAGGACAACCCCAAACCCCCATTTGGAGGTGCGCCGAGACGATTCGTTTGCTGTTCTGCGGGCTTTTCTTCTTCTTTGTGTCTTCTTCCGGGCCGCAGCTCTAAGGCTAGGGTTTTTACTGCCTCGGCGGAAACGGCGGTGGACGGAGGAGAACATGTGGAGGAAGAAGAACTGTGGAAAATGCCAAGGGCAACAGAAGTGTACGTGTGCAACCTTCCAAGAAGTTGTGACACCGAACAGCTACTTCATATGTTCAAACCTCACGGAACCGTTCTATCTGCCGAGGTTTGCCGGAATGAGGGGAGTGGTGAAAGTAGAGGGAGTGCATATGTGACGATGGGGTCTACTAACTCCGCAAAAAATGCAATTGATGCATTGGATAGAACGGATGTTGGCGGGCGCGAAATGCGGGTTAGATTTTCTGCTGAGATGAATCCTAGGGGGAGGAATCTTGAGACAATGAACTCGTCACCCAAGAGAGTTATATACTATGAAGGTCCTCATAAGTTGTATGTTGGGAATCTTTCCAGAGCTGCTAGGCCTGAAGACTTGAGGCAACTCTTTGGTAGGTTTGGTAATGTGGCTAGTGTAAGGTTGTTGCAAGATTTAAGACATGGGAAACGCCGGGTCTATGCATTTATCTCGTATCTTTCCGAGGGAGAACGTGATGCAGCAATGTCCCTCAATGGAACAGAATTTTGTGGTCGTACGCTAGTGATTAGAGAGGGTGTAGGGAGAGAGGATTGA 798 0.4837 MAANATLSLALTPFSLLKDNPKPPFGGAPRRFVCCSAGFSSSLCLLPGRSSKARVFTASAETAVDGGEHVEEEELWKMPRATEVYVCNLPRSCDTEQLLHMFKPHGTVLSAEVCRNEGSGESRGSAYVTMGSTNSAKNAIDALDRTDVGGREMRVRFSAEMNPRGRNLETMNSSPKRVIYYEGPHKLYVGNLSRAARPEDLRQLFGRFGNVASVRLLQDLRHGKRRVYAFISYLSEGERDAAMSLNGTEFCGRTLVIREGVGRED* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0966 265 PANTHER OS02G0815200 PROTEIN 62 264 - -
Apr4g0966 265 Gene3D - 166 265 IPR012677 -
Apr4g0966 265 Gene3D - 49 165 IPR012677 -
Apr4g0966 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Apr4g0966 265 SMART rrm1_1 83 156 IPR000504 GO:0003723
Apr4g0966 265 SMART rrm1_1 186 258 IPR000504 GO:0003723
Apr4g0966 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 84 154 IPR000504 GO:0003723
Apr4g0966 265 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 255 IPR000504 GO:0003723
Apr4g0966 265 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 62 264 - -
Apr4g0966 265 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 82 160 IPR000504 GO:0003723
Apr4g0966 265 SUPERFAMILY RNA-binding domain, RBD 79 166 IPR035979 GO:0003676
Apr4g0966 265 SUPERFAMILY RNA-binding domain, RBD 183 263 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0966 Apr-Chr4 7883712 7885652 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0966 81 265 Eukaryotic Initiation Factors Gene Family AT3G16380 28.421 1.92e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0966 - - gsj:114400287 360.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0966 4 7883712 7885652 Apr4g0966 4 7883712 7885652 ECH