Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0963 ATGTCGCTTGGACCGACTGCTTGCTCGTACGCAGCTATCATCCTTCATGACGATGACATCCCCGTCACTTCCGATAAAATCGTAGCCTTGTTGAAGAGGGCAAATGTTGAAGTAGAATCATATTGGCCCAGCTTGTTTGCTAAATTTGCTGAAAAGCGAAGTATTGGTGAATTGATAGCCAATGCCGGAGGCGGTGGGGCCCCAGTTGCAGTTGTAGCCGCCCCAGCTGCTGCTGCAGGTGGTGGTGGTGGTGCCGCCGCCGCTCCTGCTGCTGAGGAGAAGAAGGAAGAGCCCCAAGAAGAGAGTGATGACGATATGGGATTCAGTCTCTTCGATTAG 339 0.5251 MSLGPTACSYAAIILHDDDIPVTSDKIVALLKRANVEVESYWPSLFAKFAEKRSIGELIANAGGGGAPVAVVAAPAAAAGGGGGAAAAPAAEEKKEEPQEESDDDMGFSLFD* 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0963 112 Hamap 50S ribosomal protein L12 [rpl12]. 6 112 IPR027534 GO:0003735|GO:0005840|GO:0006414
Apr4g0963 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P1 1 103 - -
Apr4g0963 112 CDD Ribosomal_P1 7 61 - -
Apr4g0963 112 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN 1 103 - -
Apr4g0963 112 MobiDBLite consensus disorder prediction 97 112 - -
Apr4g0963 112 MobiDBLite consensus disorder prediction 79 112 - -
Apr4g0963 112 Gene3D - 1 63 IPR038716 -
Apr4g0963 112 Pfam 60s Acidic ribosomal protein 22 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0963 Apr-Chr4 7852099 7853218 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0963 1 112 Cytoplasmic Ribosomal Protein Gene Family AT5G24510 51.695 3.90e-32 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0963 K02942 - gmx:100791962 120.938