Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0962 ATGCCAGAAAACATGAACATATCTGTGAATGGACAATCTCAAGTCCCTCCAGGCTTCAGGTTTCATCCAACGGAAGAGGAGCTGTTGCAGTACTATTTGAGGAAGAAGGTATCCTTTGAGAAGATTGACCTCGATGTCATTCGAGACGTTGATCTCAACAAGCTCGAGCCATGGGACATACAAGAGAAGTGCAAAATAGGAAGCACCCCACAAAACGATTGGTACTTCTTCAGCCACAAAGACAAGAAGTATCCAACGGGAACCCGCACCAACCGCGCCACTGCTGTTGGGTTCTGGAAGGCCACCGGCCGCGACAAGGTGATATACAGCAACGGGAAGAGAATCGGAATGAGAAAAACTTTGGTTTTCTACAAAGGTCGAGCCCCTCACGGCCAAAAATCCGATTGGATCATGCATGAGTACAGGCTAGACGATAATAACACCAGCGAGATCACCAATATTATGTCCAATGCGATGGGAGATACGGCCCAGGAAGAAGGATGGGTGGTGTGCAGAATATTCAAGAAGAAGAAACATCTCAAATGCCTAGAAAGCCCTTTAGCCTCATCCATCGCTGGGGAAACCGGAAGAAGCAACTTGTTTGATTCTTGTGACGATGGAGCTTTGGAGCAAATATTTGAGCAAATGGGGAGCGACTACAAGGAAGATGATTACAACAGTGGAATGTGTTCCACTGACGGGGCCTTCAGTGTTGAAGGCTACCATGACAAGTTCTTGAAACTCCCAAGCCTAGACAGTCCAAAATCGATGAGCAAGGAGAGGCAGCAAAATGATAATAATGAAAACAATAATAATGGGTACCACTACCAACCCATTATTCGGGTAGAGATGGTCACAGACAATGAAGGGTCATTGGCAACCCACAACATAATTCATCATCCAACTGGGTGTGGTGGCCTCACCAACTGGGCAACCCTTGATCGGTTGGTTGCATCCCAATTGAATGGCCAAAGTGAGGCATCTGAGCAATTGGGTTGTTTCAATGACCCCCCCATCATCACCATGGGATATTGCAGTGGCGAGCACGACGATCATCTCCCATTGCCCACCCTATCATCTTCATCAACAGCACACAACAACGCTGCTACTTACACTACTACAACAGTACAGGAGCAAGCTTACCCCAGCGACGTTGACCTCTGGAACTTTGCCCGATCCACATCTTCTTTGTTGTCAACCTCCGAACCCCTATGCCACGTGTCCAACACTTCAATGTAA 1239 0.4738 MPENMNISVNGQSQVPPGFRFHPTEEELLQYYLRKKVSFEKIDLDVIRDVDLNKLEPWDIQEKCKIGSTPQNDWYFFSHKDKKYPTGTRTNRATAVGFWKATGRDKVIYSNGKRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLDDNNTSEITNIMSNAMGDTAQEEGWVVCRIFKKKKHLKCLESPLASSIAGETGRSNLFDSCDDGALEQIFEQMGSDYKEDDYNSGMCSTDGAFSVEGYHDKFLKLPSLDSPKSMSKERQQNDNNENNNNGYHYQPIIRVEMVTDNEGSLATHNIIHHPTGCGGLTNWATLDRLVASQLNGQSEASEQLGCFNDPPIITMGYCSGEHDDHLPLPTLSSSSTAHNNAATYTTTTVQEQAYPSDVDLWNFARSTSSLLSTSEPLCHVSNTSM* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0962 412 SUPERFAMILY NAC domain 11 176 IPR036093 GO:0003677|GO:0006355
Apr4g0962 412 Gene3D NAC domain 24 181 IPR036093 GO:0003677|GO:0006355
Apr4g0962 412 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 8 337 - -
Apr4g0962 412 ProSiteProfiles NAC domain profile. 15 176 IPR003441 GO:0003677|GO:0006355
Apr4g0962 412 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Apr4g0962 412 PANTHER NAC DOMAIN-CONTAINING PROTEIN 12 8 337 - -
Apr4g0962 412 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0962 Apr-Chr4 7802874 7804454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0962 1 411 NAC Transcription Factor Family AT2G46770 52.969 2.00e-132 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Apr4g0962 NAM 5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0962 - - aprc:113863517 798.505
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0962 4 7802874 7804454 Apr4g0962 4 7802874 7804454 ECH