Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0959 ATGTCAGAAGGTGCAGAAATTGATGAACGTGTGGATCTCGATGAGGAAAATTATATGGAAGAGATGGATGATGATGTTGAAGAACAAATAGATGATGATGCAGTGGATGGAGGTGAAGATGAAAATGTTGAAGGCAGTGGTGAAGAACATGAATATGATGACTCAGCAGCAGAGGCTGATGGGAAAGACCAATTGCCTGAAGCAGAAAAAAGTGACATTGCTACTGAATTTGGGGAAGATGAGCGAAAACCGTCTTTCATTAATGAAGATGAGAAAGAGAAGCATGATGAAATTCTTGCCCTTCCTCCTCATGGTTCTGAAGTCTTTATTGGTGGACTACCTCGGGATGTGTGTGAAGATGACTTAAGGGAATTGTGTGATCCCATGGGTGATATTCTTGAGGTGCGATTAATGAAAGACAGGGACAGTGGAGAAAACAAGGGTTATGCCTTTGTGGCTTTTAAAACAAAAGAGGTAGCACAAAAGGCGATCGAGGCGATACATAACAAGGAATTTAAGGGTAAAACTTTGAGGTGCTCACTGTCTGAAACCAAACACAGATTATTCATTGGTAATGTTCCAAAAACCTGGACTGAGGACGATTTTAGGAAAGTTGTTGAGGGTGTTGGTCCTGGAGTTGAAAACATTGAGCTCATAAAGGACCCTCAAAATCCAAGCAGGAATCGTGGGTTTGCTTTTGTTTTGTATTACAATAATGCATGTGCTGATTATTCACGGCAAAAAATGTCAAGTGCTAGTTTTAAGCTGGATGGTAATACCCCAACTGTCACTTGGGCAGATCCAAAGAACTCACCTGACCATTCTGCTTCTTCACAGGTTAAAGCTCTATATGTCAAAAATATACCGGAGAATGTTACCACTGAACAACTAAAGGAATTATTCCGTCGTCATGGGGAAGTAACAAAAGTGGTCATGCCACCTGGAAAAGCTGGAGGGAAACGTGATTTTGGTTTCATTCATTATGCAGAGAGGTCAAGTGCATTGAAAGCTGTAAAAGATACCGAGAAATATGAAATCGATGGCCAACTGCTTGAAGTTGTTCTTGCCAAGCCTCAAACTGAAAAAAAACCGGATGGGGGTTATGCCTACAATCCTGGACTTCATCCAAACCATATTCCACATCCTGCATATGGTAGTTTTTCTGGAAATCTTTATGGATCTTTAGGGGCTGGATATGGTGTTACTGCCGGTTATCAACAGCCAATGATATATGGTAGGGGTCCAATGCCAGCAGGAATGCAGATGGTTCCAATGGTGTTACCAGATGGTCGAATTGGCTATGTCCTTCAACAACCTGGTGTACAGGTGCCACCTACCCGACCCCGCAGAGTTGATCGGAGCAATGGTCCAAATGGTCAGCCAGGGCGAGGAGGAGGTAGTGGCAATGATGAGGGCAATCGGAGTAGAAGGTATCGACCCTATTAG 1446 0.4302 MSEGAEIDERVDLDEENYMEEMDDDVEEQIDDDAVDGGEDENVEGSGEEHEYDDSAAEADGKDQLPEAEKSDIATEFGEDERKPSFINEDEKEKHDEILALPPHGSEVFIGGLPRDVCEDDLRELCDPMGDILEVRLMKDRDSGENKGYAFVAFKTKEVAQKAIEAIHNKEFKGKTLRCSLSETKHRLFIGNVPKTWTEDDFRKVVEGVGPGVENIELIKDPQNPSRNRGFAFVLYYNNACADYSRQKMSSASFKLDGNTPTVTWADPKNSPDHSASSQVKALYVKNIPENVTTEQLKELFRRHGEVTKVVMPPGKAGGKRDFGFIHYAERSSALKAVKDTEKYEIDGQLLEVVLAKPQTEKKPDGGYAYNPGLHPNHIPHPAYGSFSGNLYGSLGAGYGVTAGYQQPMIYGRGPMPAGMQMVPMVLPDGRIGYVLQQPGVQVPPTRPRRVDRSNGPNGQPGRGGGSGNDEGNRSRRYRPY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0959 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 268 IPR000504 GO:0003723
Apr4g0959 481 PANTHER GEO13361P1-RELATED 2 479 - -
Apr4g0959 481 SMART rrm2_1 107 180 IPR003954 GO:0003676
Apr4g0959 481 CDD RRM3_hnRNPR_like 280 358 - -
Apr4g0959 481 MobiDBLite consensus disorder prediction 439 481 - -
Apr4g0959 481 MobiDBLite consensus disorder prediction 1 92 - -
Apr4g0959 481 Gene3D - 187 267 IPR012677 -
Apr4g0959 481 SUPERFAMILY RNA-binding domain, RBD 273 372 IPR035979 GO:0003676
Apr4g0959 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Apr4g0959 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Apr4g0959 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 178 IPR000504 GO:0003723
Apr4g0959 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Apr4g0959 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 254 IPR000504 GO:0003723
Apr4g0959 481 SUPERFAMILY RNA-binding domain, RBD 103 270 IPR035979 GO:0003676
Apr4g0959 481 SMART rrm1_1 107 180 IPR000504 GO:0003723
Apr4g0959 481 SMART rrm1_1 282 354 IPR000504 GO:0003723
Apr4g0959 481 SMART rrm1_1 187 264 IPR000504 GO:0003723
Apr4g0959 481 CDD RRM_SF 108 180 - -
Apr4g0959 481 Gene3D - 8 186 IPR012677 -
Apr4g0959 481 Gene3D - 269 378 IPR012677 -
Apr4g0959 481 MobiDBLite consensus disorder prediction 8 48 - -
Apr4g0959 481 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN Q 2 479 - -
Apr4g0959 481 MobiDBLite consensus disorder prediction 49 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0959 Apr-Chr4 7775451 7781444 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0959 108 434 Eukaryotic Initiation Factors Gene Family AT1G71770 26.053 1.87e-18 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0959 K13161 - gmx:100790907 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0959 4 7775451 7781444 Apr4g0959 4 7775451 7781444 ECH