Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0952 ATGTTGGGCAAAAGCTCTAAACAAATTGCGGTCACATATCATCACGGAAGAGAAGTTGTGACCAAAGATATACCCAAAGGGTGTTTGGCAATCAAGGTGGGTCAAGGCGAAGAACAACAGAGAATTACTGTACCCGTGAATTACCTCAACCACCCACTCTTTGCTCAGCTTCTTAAGGAGGCTGAGGAAGAGTATGGTTTTGCTCAGCAGGGAACCATAATCATCCCTTGTCAAGTGGCCCAGTTTAAGAACGTTCAACACTTGATCGATAGGGAGAGGTCCCTTCACCACCACCACCTCGTGGGTTGCTTCAGAGCTTGA 321 0.4704 MLGKSSKQIAVTYHHGREVVTKDIPKGCLAIKVGQGEEQQRITVPVNYLNHPLFAQLLKEAEEEYGFAQQGTIIIPCQVAQFKNVQHLIDRERSLHHHHLVGCFRA* 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0952 106 Pfam Auxin responsive protein 16 88 IPR003676 GO:0009733
Apr4g0952 106 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 15 99 IPR003676 GO:0009733
Apr4g0952 106 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 15 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0952 Apr-Chr4 7720184 7720747 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0952 21 94 Calmodulin-binding Proteins AT4G31320 45.946 2.70e-17 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0952 K14488 - gmx:100500512 156.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0952 4 7720184 7720747 Apr4g0952 4 7720184 7720747 ECH
Apr10g1184 10 24139545 24139925 Apr4g0952 4 7720184 7720747 ECH