Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0951 ATGGAATATTCTCGTTCATCGGTGACTCATCCTTCAGCTGCCACGAGAAAGAAGAGGAGCAAAAACAAGATAAAGTTCAGCGACGAACAAGTCAAATCGCTGGAATCTATGTTCGAGACAGACTCAAGGCTGGAATCTACCAAGAAATTGGAGCTGGCAAGAGAGCTTGGGTTGCAACCAAGACAAGTTGCCATATGGTTTCAGAATAAGAGAGCTCGATGGAAGTCAAAGCAGCTTCAGCGAGACTACACCATACTCCGAGCCAAGTACAACACCTTGTCTTCACACTTTGATGCTCTCCAGAAAGAGCATCAGGCCTTGCTGATACAGTTGCAAAAGCTGAATCATCAGCCACTAGAGCAAACTCAGAGTTGTAAACAAGAGGTAAAGCCAGGCCCGTCAACAGAACCTGCCCTTCTTAACTTGGCTGAGCATGCTGATGCTTCTTTCACATCACCACAAGATTGGGCCATGTTTCGCTTGGGCCAATCAACCGGTGATTATCAATTGTGGGACTTCTGCTCCTGA 528 0.4659 MEYSRSSVTHPSAATRKKRSKNKIKFSDEQVKSLESMFETDSRLESTKKLELARELGLQPRQVAIWFQNKRARWKSKQLQRDYTILRAKYNTLSSHFDALQKEHQALLIQLQKLNHQPLEQTQSCKQEVKPGPSTEPALLNLAEHADASFTSPQDWAMFRLGQSTGDYQLWDFCS* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0951 175 CDD homeodomain 21 78 IPR001356 GO:0003677
Apr4g0951 175 Gene3D - 12 84 - -
Apr4g0951 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-7 11 127 - -
Apr4g0951 175 Pfam Homeobox associated leucine zipper 77 116 IPR003106 GO:0006355|GO:0043565
Apr4g0951 175 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 11 127 IPR045224 GO:0003700
Apr4g0951 175 ProSitePatterns 'Homeobox' domain signature. 52 75 IPR017970 GO:0000981|GO:0006355
Apr4g0951 175 Pfam Homeodomain 21 75 IPR001356 GO:0003677
Apr4g0951 175 MobiDBLite consensus disorder prediction 1 22 - -
Apr4g0951 175 ProSiteProfiles 'Homeobox' domain profile. 17 77 IPR001356 GO:0003677
Apr4g0951 175 SUPERFAMILY Homeodomain-like 6 78 IPR009057 -
Apr4g0951 175 SMART HOX_1 15 81 IPR001356 GO:0003677
Apr4g0951 175 Coils Coil 97 117 - -
Apr4g0951 175 PRINTS Lambda-repressor HTH signature 48 57 IPR000047 GO:0003677
Apr4g0951 175 PRINTS Lambda-repressor HTH signature 57 73 IPR000047 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0951 Apr-Chr4 7717267 7718316 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0951 25 117 Homeobox Transcription Factor Family AT3G61890 62.366 2.15e-38 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Apr4g0951 Homeodomain 5.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0951 K09338 - gmx:100797862 195.282
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0951 4 7717267 7718316 Apr1g0623 1 7536901 7538488 ECH
Apr4g0951 4 7717267 7718316 Apr4g0951 4 7717267 7718316 ECH
Apr10g1185 10 24168963 24170402 Apr4g0951 4 7717267 7718316 ECH
Apr4g0951 4 7717267 7718316 Apr10g1185 10 24168963 24170402 PCT