Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0939 ATGGGAAGAGCACCTTGTTGCGCTAAAGTTGGGTTGCATAGAGGTCCATGGACTCCTCGAGAAGATGCATTGCTCACCAAGTATATTCAAGCTCATGGTGAAGGCCAGTGGAGATCATTACCAAAAAGAGCTGGGCTTCTTAGATGCGGAAAAAGTTGCAGACTAAGATGGATGAACTATCTGAGACCAGACATAAAGAGAGGAAACATAACCCCCGAAGAAGATGACCTTATTATCAGAATGCATTCACTTCTAGGAAATAGATGGTCCCTCATCGCTGGAAGATTACCAGGACGAACAGATAATGAGATAAAGAACTACTGGAATACCCATCTCTGTAAAAAGCTGAAAAATCAAGGAACAGATCCAAACACGGACAAAAAAAAGGGGAAGAAGAAGAACAAGCCCAAGAGCGAGAGCGAGAAGAACAAAGGCGCAAAAGCAGAGTCAGAAAAGACCTTAATTTATCTACCAAAACCTATAAGAGTTACTGCTTTCCCATCTATACTCACAACGGACAGCACCTTCACCTTGGATTCAAATTCAGGTAGTGCATCAACAAACCAAGAGAAAGAGCAAAGCCCAGAAGCAAAAGAGGTGAACACGGTTTGGAAGGTAGGTAATGACGGAGACAGTGGGAGGTTAGTATTCTTTGATGAAGAGCATGACATAGTCAACAGTTCTGACGTGGAATGCCACTCTGATTATGTTCACACGGATCATGGTACGCTAGAGAAGCTCTATGAAGAGTATTTGCAACTCTTGAAGGCTGAAGAGAACACGCATGAATTAGATTCTTTTGCTCAATCTTTGTTGGCGTAA 822 0.427 MGRAPCCAKVGLHRGPWTPREDALLTKYIQAHGEGQWRSLPKRAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQGTDPNTDKKKGKKKNKPKSESEKNKGAKAESEKTLIYLPKPIRVTAFPSILTTDSTFTLDSNSGSASTNQEKEQSPEAKEVNTVWKVGNDGDSGRLVFFDEEHDIVNSSDVECHSDYVHTDHGTLEKLYEEYLQLLKAEENTHELDSFAQSLLA* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0939 273 MobiDBLite consensus disorder prediction 115 150 - -
Apr4g0939 273 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Apr4g0939 273 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Apr4g0939 273 MobiDBLite consensus disorder prediction 177 191 - -
Apr4g0939 273 SMART sant 66 114 IPR001005 -
Apr4g0939 273 SMART sant 13 63 IPR001005 -
Apr4g0939 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Apr4g0939 273 PANTHER MYB TRANSCRIPTION FACTOR 1 260 - -
Apr4g0939 273 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Apr4g0939 273 CDD SANT 16 61 IPR001005 -
Apr4g0939 273 MobiDBLite consensus disorder prediction 177 199 - -
Apr4g0939 273 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Apr4g0939 273 Gene3D - 14 66 - -
Apr4g0939 273 Gene3D - 71 149 - -
Apr4g0939 273 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 260 - -
Apr4g0939 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Apr4g0939 273 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Apr4g0939 273 CDD SANT 71 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0939 Apr-Chr4 7629485 7632470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0939 1 197 MYB Transcription Factor Family AT4G38620 53.299 4.10e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Apr4g0939 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0939 K09422 - gmx:778044 402.134
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0939 4 7629485 7632470 Apr4g0939 4 7629485 7632470 ECH
Apr4g0939 4 7629485 7632470 Apr10g1203 10 24370365 24371440 PCT