Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0938 ATGGGTTTCCATGCTGAGGCAAAGGCGAGGATACATCAACCTTGTGCAGCTTGCAGGATGCTGCGCAGAAGATGTGATAGTAAGTGCCTACTTGCTCCATATTTCCCAACTGATGAGATTGAGAAATTTGTTGGAGTGCATAGAGTGTTCGGTGCTAGCAACGTTATCAAAATGATTCAGATGGTGGAGGAAACAAAGAGAGAAGATGCGGTTAAATCCATGGTCTACGAGGCCACGGCAAGGCTTAGAGACCCAGTTTATGGCAGTGCTGGAGCTATTTATCAGTTACAAAAGATGATTCAAGAGTTGAAAGCACAGTTGGAATCGATAAACACTCGGGTATCAGAGCTGAGAGAACAAAAAGACCAGTTGTTGAGCATTAGTAACAACAACGCTCAGGGCCACCTTGACCCTTTGTCATTAGAATTTGATTGTTCCATGGTCTTAGATCCATTTGAATTTCCTGTAGAAGGTGACTGGGTATATAGCATTGATAATGTTAACACCTGCTAA 513 0.4308 MGFHAEAKARIHQPCAACRMLRRRCDSKCLLAPYFPTDEIEKFVGVHRVFGASNVIKMIQMVEETKREDAVKSMVYEATARLRDPVYGSAGAIYQLQKMIQELKAQLESINTRVSELREQKDQLLSISNNNAQGHLDPLSLEFDCSMVLDPFEFPVEGDWVYSIDNVNTC* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0938 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 144 - -
Apr4g0938 170 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Apr4g0938 170 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1-LIKE 6 144 - -
Apr4g0938 170 Coils Coil 93 127 - -
Apr4g0938 170 Pfam Lateral organ boundaries (LOB) domain 14 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0938 Apr-Chr4 7615104 7616077 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0938 11 136 AS2 family AT2G28500 53.968 5.90e-45 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Apr4g0938 LOB 1.5e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0938 4 7615104 7616077 Apr4g0938 4 7615104 7616077 ECH