Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0934 ATGGAGCCTAATCTCACCGCTGCCGCCAATTCTCAGTCGGAAACGGGTGTGGGAGATGAGGATCTGTATACGAAGCTATGGAAGCTGTGTGCAGGACCTTTGGTGGATGTTCCTCGTTCTGGGGAAAGAGTTTTCTACTTCCCTCAGGGTCACATGGAACAATTGCAAGCTTCAACAAATCAGGAACTGAACCAGGAACTGAGTCAGCAAATCCCCCTCTTCAATCTCCCCTCCAAGATTCTCTGCCGTGTTGTGCACATTCAGTTGTTGGCTGAACAAGAAACTGATGAAGTTTATGCTCGTATAACTCTGCTTCCGGAAGCAAATCAAAATGAACCGACTAGTCCCGATCCAAGTGTACCCGAGACCCAAAAACAGACCTTTCACTATTTTAGCAAGATATTAACTGCCTCTGATACTAGCACACATGGAGGCTTTTCAGTTCTGAGAAGGCATGCTACGGAGTGCCTGCCTCAATTGGACATGACCCAAACAACCCCTACCCAGGAATTGGTAGCAAAGGATCTTCATGGGTTCGAGTGGAAGTTTAAACATATATTCAGAGGTCAACCAAGGAGGCACTTACTCACAACTGGCTGGAGTACATTTGTCACATCCAAAAGACTGGTTGCTGGAGATGCTTTTGTGTTTTTAAGGGGAGAGGATGGGGAGCTGAGAGTTGGTGTGAGACGTCTCGCTCGGCAGCAGAGTCCCATGCCTTCGTCTGTGATATCGAGCCAGAGCATGCATCTTGGAGTGCTTGCCACTGCTTCTCATGCTGTTTTGACTAGTACCATGTTTGTGGTTTATTACAAACCCAGGACTAGCCAGTTTATTATTGGTGTGAACAAATATTTAGACGCAATCAACAATAAGTTTTCAGTTGGCATGCGTTTCAAGATGAGATTTGAGGTGGAGGACTCGCCTGAAAGAAGGTTCTCTGGTACTATTGTTGGGGTTGGGGATGTATCTCCAGGATGGCCAAACTCTCCTTGGCGTTCATTGAAGGTGCAATGGGATGAACCAGCAATAATTCCGAGGCCAGAGATGGTTTCTCCGTGGGAGATAGAGCCTTTTGGTGCTTCTACTGCTTTAAATGTCGCTCAACCTGCAGTAAAGAGCAAAAGGTCGAGGCCTGCTGAGGTTTCATCTGAAATTGCTCCAAATTCTCTTGCTCCAGCTTTCTGGTATCATGGACCATCCTTATCCCACGACCCTACACAATTAGGTAGCGCTGCAGAAAACCAAAGTAATGAAAACCCAGTTGTCTGGTCTTCGAGGCAGAAAGAAATTAATGGCAATCCTGTGAATGCTAACTCCAGCAGCTCCAAAGTACGTGCAGAAGGAATGTGGTCTTCTTCCCCACATTTGAATGCCTCTTGTAACTTTTTTCCTGACCCTAAAAACAACAAAGCTGTTGCAACACAATTATCCGTCTCTGGTAGTTACCCTCCGGTTTCATCTGAGAGGAATGATGACTTGGCACATGATCCAGTGGAAAGTGGTAAAAAGACTGAGAATCCCATGGATTGCTGGGTATTTGGAGTTAATTTGACTAACAACTTTACTAATGTTACCCTTCCGGAGAAAGAAATTGGATGTCCAGCTATTATTCCCAGTGGTCCCAAAGATTCTATTGCTGTTGCTGCATGTGAAACTGAGGCTGCTCAGAATCCCAATTATTCACTGTCCAATAAGGAGCAGATGCAAGTTATTTCTGATGCATCACCCAATGAGAAGCAGACCAAGCAGGCCACTATAGTACCATCCATGAGGACCAGGACCAAGGTGCAAATGCAAGGTGTTGCTGTTGGTCGTGCTGTTGACCTGACTGTGTTAAAAAATTATGATGATCTCATAGACGAGTTAGAGAAAATGTTTGACATAAAGGGAGAGCTTCGTGTGCAAAACAAGTGGGCAGTTACTTTTACTGATGATGAAGATGACATGATGCTTGTTGGCGATGATCCATGGCCTGAGTTCTGTAGCTTGGTGAAGAGGATTTTCATATATTCAAAGGAAGAGGTAAAGAAGATGAAATGCAAGCATTCTGCTGCTTCATCAGAGGGTGAAGGGACTATGTTGAGTCCAGATTCACAGAATAAGGATGAGACTCAGCAAATCTCTTGCGATTTGACAGCTTAA 2145 0.4503 MEPNLTAAANSQSETGVGDEDLYTKLWKLCAGPLVDVPRSGERVFYFPQGHMEQLQASTNQELNQELSQQIPLFNLPSKILCRVVHIQLLAEQETDEVYARITLLPEANQNEPTSPDPSVPETQKQTFHYFSKILTASDTSTHGGFSVLRRHATECLPQLDMTQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGEDGELRVGVRRLARQQSPMPSSVISSQSMHLGVLATASHAVLTSTMFVVYYKPRTSQFIIGVNKYLDAINNKFSVGMRFKMRFEVEDSPERRFSGTIVGVGDVSPGWPNSPWRSLKVQWDEPAIIPRPEMVSPWEIEPFGASTALNVAQPAVKSKRSRPAEVSSEIAPNSLAPAFWYHGPSLSHDPTQLGSAAENQSNENPVVWSSRQKEINGNPVNANSSSSKVRAEGMWSSSPHLNASCNFFPDPKNNKAVATQLSVSGSYPPVSSERNDDLAHDPVESGKKTENPMDCWVFGVNLTNNFTNVTLPEKEIGCPAIIPSGPKDSIAVAACETEAAQNPNYSLSNKEQMQVISDASPNEKQTKQATIVPSMRTRTKVQMQGVAVGRAVDLTVLKNYDDLIDELEKMFDIKGELRVQNKWAVTFTDDEDDMMLVGDDPWPEFCSLVKRIFIYSKEEVKKMKCKHSAASSEGEGTMLSPDSQNKDETQQISCDLTA* 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0934 714 SUPERFAMILY CAD & PB1 domains 589 668 - -
Apr4g0934 714 Pfam B3 DNA binding domain 131 231 IPR003340 GO:0003677
Apr4g0934 714 Gene3D - 588 680 - -
Apr4g0934 714 ProSiteProfiles PB1 domain profile. 592 684 IPR000270 GO:0005515
Apr4g0934 714 SUPERFAMILY DNA-binding pseudobarrel domain 119 260 IPR015300 -
Apr4g0934 714 PANTHER AUXIN RESPONSE FACTOR 11 9 687 - -
Apr4g0934 714 MobiDBLite consensus disorder prediction 479 503 - -
Apr4g0934 714 Gene3D - 292 364 - -
Apr4g0934 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 687 IPR044835 GO:0003677|GO:0006355|GO:0009725
Apr4g0934 714 Pfam Auxin response factor 257 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Apr4g0934 714 MobiDBLite consensus disorder prediction 682 714 - -
Apr4g0934 714 MobiDBLite consensus disorder prediction 406 442 - -
Apr4g0934 714 ProSiteProfiles B3 DNA-binding domain profile. 131 233 IPR003340 GO:0003677
Apr4g0934 714 Gene3D - 128 232 IPR015300 -
Apr4g0934 714 CDD B3_DNA 129 231 IPR003340 GO:0003677
Apr4g0934 714 Pfam AUX/IAA family 576 674 IPR033389 -
Apr4g0934 714 MobiDBLite consensus disorder prediction 689 714 - -
Apr4g0934 714 SMART B3_2 131 233 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0934 Apr-Chr4 7590421 7594919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0934 18 679 B3 DNA Binding Superfamily AT4G23980 56.992 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Apr4g0934 AUX_IAA 1.8e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0934 K14486 - gmx:100820503 1043.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0934 4 7590421 7594919 Apr4g0934 4 7590421 7594919 ECH