Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0933 ATGGACCATCAACAACCACCGTCACCGTGCCCCGAAGATGACGTAACCACCGTAACAGAAAAATCCGATAAGAGGAGGGGAGGCACGCGCCACCCCGTGTACCGTGGGGTACGGAAGCGGCGTTGGGGCAAATGGGTGTCAGAAATTCGGGAGCCACGGAAGAAATCGCGCATATGGTTGGGGTCGTTTCCGGTGCCGGAGATGGCGGCGAGAGCATACGACGTCGCAGCGTACTGCCTCAAAGGTCGAAAAGCGCAGCTCAACTTTCCCGACGAGGTGGATCACCTGTCGCTTCCGTCGACCTGCACGGCCAGAGACATTCAAGCGGCCGCGGCCAAGGCGGCGCATATGATGAAAGCTTCGCCTGATGAGAAGAGTGGCATTTCGTCCGACGGAGACAGCGCCGGCGACGATTTTTGGGGCGAGATTGAGTTGCCGGAGCTGATGGGCGGCGAGTCTTGCTGGAGTTCTCCCGGCGGTTCTTCGTGGAATTCGGCCGGCGACATCTCGGCGTGGCCGGAGGTTGAGCTTTTGCCGCAGCAACCGTTCATGGCGTGTCTATAA 564 0.5975 MDHQQPPSPCPEDDVTTVTEKSDKRRGGTRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPVPEMAARAYDVAAYCLKGRKAQLNFPDEVDHLSLPSTCTARDIQAAAAKAAHMMKASPDEKSGISSDGDSAGDDFWGEIELPELMGGESCWSSPGGSSWNSAGDISAWPEVELLPQQPFMACL* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0933 187 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Apr4g0933 187 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Apr4g0933 187 CDD AP2 34 91 IPR001471 GO:0003700|GO:0006355
Apr4g0933 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 17 187 - -
Apr4g0933 187 Gene3D AP2/ERF domain 33 91 IPR036955 GO:0003700|GO:0006355
Apr4g0933 187 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Apr4g0933 187 Pfam AP2 domain 32 82 IPR001471 GO:0003700|GO:0006355
Apr4g0933 187 MobiDBLite consensus disorder prediction 1 32 - -
Apr4g0933 187 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 17 187 - -
Apr4g0933 187 SUPERFAMILY DNA-binding domain 33 92 IPR016177 GO:0003677
Apr4g0933 187 MobiDBLite consensus disorder prediction 16 30 - -
Apr4g0933 187 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0933 Apr-Chr4 7570329 7570947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0933 29 187 AP2-EREBP Transcription Factor Family AT1G01250 63.580 1.08e-58 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Apr4g0933 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0933 K09286 - gmx:100802036 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0933 4 7570329 7570947 Apr4g0933 4 7570329 7570947 ECH
Apr4g0933 4 7570329 7570947 Apr10g1212 10 24482080 24482897 PCT