Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0932 ATGAAGGTGGAGGTGGGGTTAGGGCGCGTGGTGTGGGACGATGAAGAGAAGGCGATGGTTGCGGGCGTACTGGGCGCACGCGCTTTCGAATTTTTGATGACAAACTCTGTGTCGAATGAGAGTCTCTTAATGGCCGTTGGGAGTGACGAGGGGCTTCAGAATAAGCTGTCGGATCTCGTGGAACGCCCCAACGGCTCCAATTTCAGTTGGAACTACGCGATTTTCTGGCAGCTCTCGCAATCAAAATCTGGGGAGTGGGTTCTGGGTTGGGGAGATGGGTGTTGCAGGGAACCCAACGAGGAAGAAGAGAGTGTGCTTAGCGGAATACTGAGCCTTTCCATGGAGGATGAGATGCAGCAGAGGAGGAGGAAGAGGGTACTGCAAAAGCTGCACACCACCTTTGGGGGTTCAGACGAGGACAATTACGCTTTTGGGCTTGACCATGTCACTGACACCGAGATGTTCTTTCTCGCTTCCATGTACTTCTCTTTTCCTCGTGGCCATGGTGGCCCAGGTAAGTGCTTTGCATCAGGGAAGCATTTCTGGCTCAAATCTGTATCTGATTATTGCGTACGATCTTACTTGGCTAAATCCGCCAGAATTCAGACTGTTGTTTTGGTCCCTACTGAGTTGGGAGTGGTGGAGTTGGGTTCTGTGAGAATGTTAGCCGAGAGCTTTGAATTGTTGCAAGCCATTAAAACTGTGTTCTCCACCCAACCATCGTACCCTGGGGTGAAGCCTGTGCCTGCAGTGAGTGATAAGAGAGACGAGAGTGCCATTTTTACTGGTTTGGCTATTGGGGACGGTGGCAAGGTTGATGGAGTGCTTCCAAAGGTTTCTGTGAACTCGGGTAGTAGAACACATTTCAGGGAGAAACTTGCTATTAGAAAAATGGAGGATAGGCCAGCATGGGGAGGCCATCCTAATGGGAACAACATTAACTTTCCCAATCTTAGGAATGGTCTTCATGGTCCAAGTTGGGTGCCCAATCAAGCTGCGAGGCAGCCTAGTCCCATTGAGATTTTTGCTCCTAGGTCTTCCACAAGCAATGTCTCTGAGCTAGGTAATGGTGTGAGACAGGATTTCAGGCTTAACAACAACTATCAACCTCAAAGGCAGGTGCAAATGCAAATTGACTTCTCGGGAGCCACTTCCAGGTCTTTTGCGAGGCCGGTTCTTGCTGAATCAGAACTTTCTGATGTTGAGGCCTCGTGCAAGGAGGAGCAACCGAGTGTTGTTGCCGACGAAAGGAGGCCCAGGAAGCGAGGCAGGAAGCCTGCTAATGGAAGGGAAGAGCCCCTCAATCACGTGGAAGCAGAGAGGCAAAGGCGTGAGAAACTGAACCAACGTTTCTATGCATTAAGATCTGTTGTGCCCAATATATCCAAGATGGACAAGGCATCGTTGCTGGGCGATGCCATTGCTTACATCAATGAGCTTCAGGCAAAGCTCAAGATGATGGAGGCTGAAAGAGAAAGATTTGGAAGCACTTCAAGGGATGGATCAGTCTTGGAGGGTAGCTCAAGATCGGAAAATCATCTGGTTAAGGCTCCTGATGTGGACATTGAAGCTGTCCAAGACGAGGTTGTTGTAAGGGTGAGCTGCCCTCTTGATACTCATCCTGTTTCCAAAGTAATCCAAACACTCAAAGACGCACAAATCAGTGTTGTAGAGTCAAAACTTGCTGCTGCAGATGATACTATTTTCCACACATTTGTAATTAAGTCCCAAGGATCTGAACAGCTTACAAAGGACAAGTTGATTGCTGTGTTTTCCGAAGAGTCCAACTCATTATTACAGCCATTGTCGTCGGTTGGGTAA 1821 0.4882 MKVEVGLGRVVWDDEEKAMVAGVLGARAFEFLMTNSVSNESLLMAVGSDEGLQNKLSDLVERPNGSNFSWNYAIFWQLSQSKSGEWVLGWGDGCCREPNEEEESVLSGILSLSMEDEMQQRRRKRVLQKLHTTFGGSDEDNYAFGLDHVTDTEMFFLASMYFSFPRGHGGPGKCFASGKHFWLKSVSDYCVRSYLAKSARIQTVVLVPTELGVVELGSVRMLAESFELLQAIKTVFSTQPSYPGVKPVPAVSDKRDESAIFTGLAIGDGGKVDGVLPKVSVNSGSRTHFREKLAIRKMEDRPAWGGHPNGNNINFPNLRNGLHGPSWVPNQAARQPSPIEIFAPRSSTSNVSELGNGVRQDFRLNNNYQPQRQVQMQIDFSGATSRSFARPVLAESELSDVEASCKEEQPSVVADERRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAIAYINELQAKLKMMEAERERFGSTSRDGSVLEGSSRSENHLVKAPDVDIEAVQDEVVVRVSCPLDTHPVSKVIQTLKDAQISVVESKLAAADDTIFHTFVIKSQGSEQLTKDKLIAVFSEESNSLLQPLSSVG* 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0932 606 MobiDBLite consensus disorder prediction 400 442 - -
Apr4g0932 606 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 431 480 IPR011598 GO:0046983
Apr4g0932 606 CDD bHLH_AtAIB_like 428 493 - -
Apr4g0932 606 PANTHER MYC 1 596 IPR045084 GO:0003700|GO:0006355
Apr4g0932 606 Pfam Helix-loop-helix DNA-binding domain 435 481 IPR011598 GO:0046983
Apr4g0932 606 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 434 494 IPR036638 GO:0046983
Apr4g0932 606 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 52 236 IPR025610 -
Apr4g0932 606 Coils Coil 470 497 - -
Apr4g0932 606 MobiDBLite consensus disorder prediction 399 442 - -
Apr4g0932 606 Gene3D - 424 496 IPR036638 GO:0046983
Apr4g0932 606 PANTHER ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR 1 596 - -
Apr4g0932 606 SMART finulus 437 486 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0932 Apr-Chr4 7556040 7559634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0932 5 606 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 51.274 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Apr4g0932 bHLH-MYC_N 6.9e-52 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0932 - - gmx:100801502 868.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0932 4 7556040 7559634 Apr4g0932 4 7556040 7559634 ECH
Apr4g0932 4 7556040 7559634 Apr10g1213 10 24499565 24502401 PCT