Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0930 ATGGAAGCCGAAACTCGACGGAAAATCGAGGAGATGGTTTTGGATATTCTCAAGAAATCCGACATGGGAGAAGCCACTGAGTTCACCGTCCGAGTCGCTGCCTCCGAGCGTCTCGGCATCGACCTCTCCGATACCGTCAGCAAACAATTCGTCAGAACAATCGTTGACTCTTTTCTTCTCTCTCTTGCCGCCGAAGACGCCAACAAGAAACCGCTTCAACACTCCACAGAACCAGAGGACAAACCGCTCCAAGATTTCATAGAGCCGGAGCTCGTCAAACCTAAGAAAGAAGATTTCGAAAACGTTATTTGTCAGCTGTCAAACAGGAGGAATGTGATTGTTCATAATTTCAAAGGGATGACGTTGGTGTCAATTAGGGAGTTCTATAACCAATATGGAAAACAGTATCCTGGTTATAAAGGGATTAGTTTATCTACTACACAATGGTCAATCTTCAAGAAGAGTGTTCCTGCCGTAGAGGAAGCTATCAAAAAGATGGAAAGAAGGCTAAGGTCGGAGCTTCATGGTAAGGAAAATGAAGATGCATCAGATTCAGCAGTTGTTGCTGTTGCTCCTCTTGAGCCTGTCACTATTGATATCATTCGTTTTGATGGGAATAATTACCAATTCTGGGCTCAGCAGATGCAATTACTCTTGAAACAGTTGAAGATTGGATATGTGCTTACTGAACTATGCCCAAATGCAACATTAGGAGGAGATGCAAGTGCTGAAGAAATTGCTACAGCCAAGACTGCAGAAAAGAGATGGGTGAATGATGATTTAATGTGTCGTCGCAATATCTTGACCCATTTATCTGATCATCTTTTCAATCAGTATGCGAGCAGAAAAATGAGTGCTAAGGAGTTATGGGAAGAGTTAAAACTGATCTATCTGTATGAGGAATGTGGAACTAAGAGGTCTCAGGTGAAAAAGTATATTGAATTTCAGATGGTTGATGAGAGAGCAGTTGTTGAGCAAATCCAAGAATTAAATAGCATTGCAGACTCTATTGTTGCCGCCGGAATGCACATTGACGATAACTTTCATGTTAGTGTCATCATTTCAAAGCTTCCACCATCCTGGAAGGACTTCTGCTTCAGGGTAATACACGAGGACTGTCTATCTTTGTCAAAGTTAATGGAACGGATACAGACAGAGGAAGAATCCCGCAAACATTCTAGTAGTGTAGGATTTCACCATGCCAGTAAAGGGGGACAGAGGTGGTTTGACAATAAGCCAACCGGCATGTATAGGAATAGGTCAGAAATTAATGCCAAGAGTGTAGCTTGTTCTATATGTGGCAAGAGTGGACATCTTTCTAAAAACTGCTGGAGAAGATATGACAAGCAAGCTAATGAAAGGAAAGCAGAAGAGGATAAGCGTACACCTGCACAAGTTGATACACCGGTTTCAAGCTATTGGCAGATTGACTTAATGCCCGTTTGGAGTGTTCAGAATTGA 1461 0.4237 MEAETRRKIEEMVLDILKKSDMGEATEFTVRVAASERLGIDLSDTVSKQFVRTIVDSFLLSLAAEDANKKPLQHSTEPEDKPLQDFIEPELVKPKKEDFENVICQLSNRRNVIVHNFKGMTLVSIREFYNQYGKQYPGYKGISLSTTQWSIFKKSVPAVEEAIKKMERRLRSELHGKENEDASDSAVVAVAPLEPVTIDIIRFDGNNYQFWAQQMQLLLKQLKIGYVLTELCPNATLGGDASAEEIATAKTAEKRWVNDDLMCRRNILTHLSDHLFNQYASRKMSAKELWEELKLIYLYEECGTKRSQVKKYIEFQMVDERAVVEQIQELNSIADSIVAAGMHIDDNFHVSVIISKLPPSWKDFCFRVIHEDCLSLSKLMERIQTEEESRKHSSSVGFHHASKGGQRWFDNKPTGMYRNRSEINAKSVACSICGKSGHLSKNCWRRYDKQANERKAEEDKRTPAQVDTPVSSYWQIDLMPVWSVQN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0930 486 ProSiteProfiles Zinc finger CCHC-type profile. 430 443 IPR001878 GO:0003676|GO:0008270
Apr4g0930 486 Pfam DEK C terminal domain 5 59 IPR014876 -
Apr4g0930 486 Gene3D Transcriptional Coactivator Pc4; Chain A 94 171 IPR009044 GO:0003677|GO:0006355
Apr4g0930 486 SUPERFAMILY Retrovirus zinc finger-like domains 411 450 IPR036875 GO:0003676|GO:0008270
Apr4g0930 486 Pfam Transcriptional Coactivator p15 (PC4) 104 154 IPR003173 GO:0003677|GO:0006355
Apr4g0930 486 PANTHER PBF68 PROTEIN 1 466 - -
Apr4g0930 486 PANTHER PBF68 PROTEIN 1 466 - -
Apr4g0930 486 Pfam gag-polypeptide of LTR copia-type 256 392 - -
Apr4g0930 486 SUPERFAMILY ssDNA-binding transcriptional regulator domain 103 165 IPR009044 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0930 Apr-Chr4 7542770 7546992 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Coactivator p15 Apr4g0930 Retrotran_gag_2 3.2e-17 CL0523
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0930 - - gmx:100800963 578.941