Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0927 ATGGAATCGAGTAGCCTTGATAGCAGCAGCAGCACAGTGTTATCGTTGAGTATGATGGAAGAGGATGACCATTCCCATCAGTTTTCTGCAATTTCGAAGCTGCATAACAATGGTCCCACCACCACCAGTGTCCATGACCTTCTTGAATGCCCCGTCTGCACCAACTCCATGTATCCTCCAATCCATCAGTGCCACAATGGGCACACACTGTGTTCAACTTGTAAGACAAGGGTACACAATCGATGCCCAACTTGCAGGCAGGAACTTGGTGATATAAGGTGTCTGGCCTTGGAGAAAATAGCAGAATCACTGGAACTGCCTTGCAGATATATCTCTCTTGGGTGTCCAGAGATATTTCCCTATTACAGCAAACTCAAACACGAGGCTATTTGTAACTTCAGACCACACAACTGCCCTTATGCTGGGTCAGACTGCTCTGTGGTTGGGGATATTTCATACCTTGTTACTCATTTAAGGGATGACCACAGGGTTGATATGCATTCCGGATGCACTTTTAACCATCGCTATGTCAAATCTAATCCCCTGGAAGTAGAAAATGCTACATGGATGCTAACGGTATTTCACTGTTTTGGCCAGTATTTTTGCCTTCATTTTGAAGCCTTTCAACTTGGCATGGCTCCTGTTTACATGGCGTTCCTCCGATTCATGGGTGATGAAAGAGAGGCTAGGAACTACAGCTATAGCTTGGAGGTGGGAGGAAATGGACGTGGAGACAGGAAAGAGTTGAAGCTACGGGTAACTGGGAGGATATGGAAAGAACAGCAAAACCCTGAAGTCCAAACAGTTCCGAAGTGGATCAAGTCACAAATGGTTCTTTCAAATCAATGGTGA 852 0.4554 MESSSLDSSSSTVLSLSMMEEDDHSHQFSAISKLHNNGPTTTSVHDLLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKIAESLELPCRYISLGCPEIFPYYSKLKHEAICNFRPHNCPYAGSDCSVVGDISYLVTHLRDDHRVDMHSGCTFNHRYVKSNPLEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDEREARNYSYSLEVGGNGRGDRKELKLRVTGRIWKEQQNPEVQTVPKWIKSQMVLSNQW* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0927 283 CDD RING-HC_SIAHs 48 86 - -
Apr4g0927 283 Pfam Seven in absentia protein family 92 243 IPR018121 GO:0005737|GO:0006511|GO:0007275
Apr4g0927 283 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 244 267 - -
Apr4g0927 283 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 243 - -
Apr4g0927 283 SUPERFAMILY RING/U-box 37 89 - -
Apr4g0927 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 102 IPR013083 -
Apr4g0927 283 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 160 264 IPR008974 GO:0005515
Apr4g0927 283 PANTHER UBIQUITIN LIGASE SINAT3 244 267 - -
Apr4g0927 283 PANTHER UBIQUITIN LIGASE SINAT3 1 243 - -
Apr4g0927 283 SUPERFAMILY TRAF domain-like 103 254 - -
Apr4g0927 283 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 158 IPR013083 -
Apr4g0927 283 ProSiteProfiles Zinc finger RING-type profile. 50 86 IPR001841 -
Apr4g0927 283 ProSiteProfiles Zinc finger SIAH-type profile. 103 163 IPR013010 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0927 Apr-Chr4 7509683 7517209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0927 29 261 C3H Transcription Factor Family AT2G41980 65.185 1.98e-127 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0927 K04506 - gmx:100792687 512.686
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0927 4 7509683 7517209 Apr4g0927 4 7509683 7517209 ECH