Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0921 ATGGACATCTTGAAGGTCCACTTCTTCCATTTCTTCATCATTTTTCATGTCATATATGCCTCAAATGATTGCAAATTTTCATGGTGCAGCGACAATGACATCCTTATTCGTTTCCCTTTTCAATTAGGTGAGCAACGACCTTATTGTGGGTACCCTGGTTTCAAATTAACATGTACTAATGATAGCAAAACAGTTCTAACGCTTCCATATGCGGGAGAATTCTATGTCCGCAACATTGATTACTTCAGACAACAGATACAAGTGTATGACCCTCATAATTGCCTTCCAAAACGTCTTCTAAGTCTCAATCTTTCAGGTTCTCCCTTTATTGCCGCTTTTGATCATAACTACACCTTCTTAAGCTGCCCAACTCAAAACACAGTCACAGGTTCACAATTCATTCCCATTGATTGTCTTAGCAATTCTACATCTTTCGTGTCTGCTATTCCTTCAGTGAACTTGACCAATTCATTGCGGGGTTCTTGCTCTGTTATTAAGAAGCTCTCAGTTGCAATTGCAAGGCCAAGACAATATGTGGAAAATTTCAAAGATGACCTTACTGAAGATCTTCAATTAACATGGTATGCACCTGATTGTAGATATTGCGAAGCACAAGAGGCCATGTGTGGATTTGAGAGCATAAACAGTAGTCAAGTTCAGTGTTTCTTTGATTACCAAACGGGTCGTTCACAACACGGTCTTCGAGTTTTTGGAATCATCACATTATCCATTGCTGGACCAGCTATCATCTGTGCTATTGGGATGACATGCTTCGCGTGCTTAAAGTACAACAGAGGCATTAGCCCCAGAATTGCTGCAGCACAGAGGTCAGCAGCAACTGAAATACCTGCCATTACCCGGATGGGGCTTGATGAGTTTACAATTGAGTCTTACCAGAAGTTAGTATTAGGGGAGAGCCGAAGACTGCCAGGACTCAACGATGGATGTTGCACGATATGCCTGTCAGAGTATAAAACAAAAGACACAATCAGATGCATTCCAGAATGTGCACACTGCTTCCATGCAGATTGCATAGATGAATGGCTTCGGATGAACACTACATGCCCCCTTTGCCGCAACTCTCCATCTCCTTCTTCTACTGTTCCAGTTGTGTCCAGTAGTGTGACCCTTGATTGA 1137 0.4213 MDILKVHFFHFFIIFHVIYASNDCKFSWCSDNDILIRFPFQLGEQRPYCGYPGFKLTCTNDSKTVLTLPYAGEFYVRNIDYFRQQIQVYDPHNCLPKRLLSLNLSGSPFIAAFDHNYTFLSCPTQNTVTGSQFIPIDCLSNSTSFVSAIPSVNLTNSLRGSCSVIKKLSVAIARPRQYVENFKDDLTEDLQLTWYAPDCRYCEAQEAMCGFESINSSQVQCFFDYQTGRSQHGLRVFGIITLSIAGPAIICAIGMTCFACLKYNRGISPRIAAAQRSAATEIPAITRMGLDEFTIESYQKLVLGESRRLPGLNDGCCTICLSEYKTKDTIRCIPECAHCFHADCIDEWLRMNTTCPLCRNSPSPSSTVPVVSSSVTLD* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0921 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 364 IPR013083 -
Apr4g0921 378 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Apr4g0921 378 PANTHER RING-H2 FINGER PROTEIN ATL21A-RELATED 4 367 - -
Apr4g0921 378 SUPERFAMILY RING/U-box 308 363 - -
Apr4g0921 378 SMART ring_2 317 358 IPR001841 -
Apr4g0921 378 Pfam Ring finger domain 317 359 IPR001841 -
Apr4g0921 378 Pfam Wall-associated receptor kinase galacturonan-binding 24 90 IPR025287 GO:0030247
Apr4g0921 378 Pfam Wall-associated receptor kinase C-terminal 155 223 IPR032872 -
Apr4g0921 378 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0921 Apr-Chr4 7457419 7459382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0921 29 364 C3H Transcription Factor Family AT2G25410 43.732 3.85e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0921 - - gmx:100799895 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0921 4 7457419 7459382 Apr4g0921 4 7457419 7459382 ECH
Apr4g0921 4 7457419 7459382 Apr10g1223 10 24596890 24605419 PCT