Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr4g0920 ATGGAGCAGAACAAGGGCAACAAGATGTACAACCTGTTCGTGAAGCACTTGGACGGGAAAACCCTAACCCTAACATTCCCCTCTCCGATCCTACACGCGAATTCCATTAAGGATCGCCTCTTCGAACTCACCGGAATCCCCATCCAACATCAGCGCCTCGTCACCGGTTGCCGCCACCTCAACGACGAGAAATCGGTGATCCAGTGTTCGCCGGAGGACGGCAACATCTTCCCGTCGGTTCGGCTGCTGTTGCGGTTGAAAGGAGGGAAAGGAGGGTTCGGGTCGCTGTTGCGCGGGGCGGCGACGAAGGCGGGGCAGAAGAAGACGAACAATTTCGACGCGTGCAGAGATATGAGTGGACGGAGACTGAGGCACGTGAACGCGGAGAAGAGGTTGGAGGAGTGGAAGGCTGGGGAAGAGGAGAGAAGGCTGGAGAAGGTGGCAGAAGATTTTCTGAAGAAGCAGATGAAGAAGGGTAAGAAGGGCGTTGGTGATGGCGAGGCTCACAAATACGTTGCTAAATACAGGGAAGAATCTGAACGTTGTGTTGCTGAGGTTGCCTTGTCCGTTAAGGAGGCTCTCAGTTGTAAGCGTAAGAGCCCTTCACAATCTTCTTTACCCCATGATGCCAAGAAGTTTAAGATTTGGATGGGGAAGAGGAAACTGAATGAAAGTGATAGTGATTATTCCGACGATGATGATGACGGGGAAACTGAAAAGTCAGTTCTGTTAAGTGGCCAGAATGAGTCGGAGTCAAATAAGGCTGAAGGCAGTTTGGGCTCGGTGACTGGTGGGAAACGAGATGGAGACTCTTCTGGTGCTGGCTCGTGTGAAAGTGGGTCTGAAGAAGAGAAGGAAACTGTTGGATTGCAGAGCAGTGAAAGTGTTGTGGCCGAACCTGTGATAAATGATGAGATAATGGAGGCTACTGCTCTGCCTTGTTTGGAGTCAGTGCTTTCTGGAATTAATGCTGAAGATAATGGAAATCAGGATTGCGATGGAGGTGTGGCTGACAAGTTTGTTGGTGCTGTCAGTCAAGCCTCAAATGTTACAATCTCTGAAACTGTGGTTGATGCAAGCAAATCTAATGATATGGAAATTGATGGATCTCTTGAGCATAAAGCAGCAGTCCATGAAGAAAGCTCTCCAAGCACTAGCATTCCTGCATTGGAGGAGCCTCTGAATTTTGATGCTTTTAATTCAGCTGCAGAACTTGAGGTTCTAGGCTTGGAAACGTTGAAGTCTGAACTGCAGTCACGTGGGTTAAAATGTGGAGGCACCTTGCAGGAGCGTGCTGCCAGGCTTTTTCTTTTAAAATCGACTCCCCTGAATAAACTTCCAAAGAAGCTGCTTGCAAAGAAATGA 1365 0.4901 MEQNKGNKMYNLFVKHLDGKTLTLTFPSPILHANSIKDRLFELTGIPIQHQRLVTGCRHLNDEKSVIQCSPEDGNIFPSVRLLLRLKGGKGGFGSLLRGAATKAGQKKTNNFDACRDMSGRRLRHVNAEKRLEEWKAGEEERRLEKVAEDFLKKQMKKGKKGVGDGEAHKYVAKYREESERCVAEVALSVKEALSCKRKSPSQSSLPHDAKKFKIWMGKRKLNESDSDYSDDDDDGETEKSVLLSGQNESESNKAEGSLGSVTGGKRDGDSSGAGSCESGSEEEKETVGLQSSESVVAEPVINDEIMEATALPCLESVLSGINAEDNGNQDCDGGVADKFVGAVSQASNVTISETVVDASKSNDMEIDGSLEHKAAVHEESSPSTSIPALEEPLNFDAFNSAAELEVLGLETLKSELQSRGLKCGGTLQERAARLFLLKSTPLNKLPKKLLAKK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr4g0920 454 ProSiteProfiles Ubiquitin domain profile. 10 75 IPR000626 GO:0005515
Apr4g0920 454 Pfam Replication stress response SDE2 C-terminal 385 453 - -
Apr4g0920 454 Pfam Silencing defective 2 N-terminal ubiquitin domain 10 160 IPR024974 -
Apr4g0920 454 SUPERFAMILY Ubiquitin-like 5 76 IPR029071 -
Apr4g0920 454 PANTHER SPLICING FACTOR SF3A-RELATED 9 453 - -
Apr4g0920 454 MobiDBLite consensus disorder prediction 241 259 - -
Apr4g0920 454 MobiDBLite consensus disorder prediction 223 296 - -
Apr4g0920 454 CDD Ubl_ubiquitin_like 12 77 - -
Apr4g0920 454 Gene3D - 2 91 - -
Apr4g0920 454 PANTHER REPLICATION STRESS RESPONSE REGULATOR SDE2 9 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr4g0920 Apr-Chr4 7454828 7457934 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr4g0920 387 453 C2H2 Transcription Factor Family AT5G06160 47.761 2.62e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr4g0920 K25059 - gmx:100781694 600.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr4g0920 4 7454828 7457934 Apr4g0920 4 7454828 7457934 ECH